Hb_006420_020

Information

Type -
Description -
Location Contig6420: 16355-18109
Sequence    

Annotation

kegg
ID rcu:RCOM_0699480
description ubiquitin-protein ligase, putative
nr
ID XP_012092004.1
description PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
swissprot
ID B9S2H4
description UPF0392 protein RCOM_0530710 OS=Ricinus communis GN=RCOM_0699480 PE=3 SV=1
trembl
ID A0A067JBW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21743 PE=4 SV=1
Gene Ontology
ID GO:0016021
description upf0392 protein rcom_0530710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006420_020 0.0 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
2 Hb_000571_150 0.1462142732 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
3 Hb_080147_080 0.1485442128 - - peroxiredoxin, putative [Ricinus communis]
4 Hb_000878_100 0.1658906156 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
5 Hb_003125_030 0.1708213072 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
6 Hb_010831_020 0.1715517783 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_006745_010 0.1718681434 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
8 Hb_075449_020 0.1736580481 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
9 Hb_000540_120 0.1765612305 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
10 Hb_002316_050 0.1821206001 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000979_240 0.1840339943 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
12 Hb_178127_010 0.1871451101 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
13 Hb_002196_010 0.1897352556 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
14 Hb_012226_010 0.1900623588 - - PREDICTED: protein DGCR14 [Jatropha curcas]
15 Hb_001950_030 0.1908117337 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
16 Hb_000258_370 0.1935608662 - - hypothetical protein [Ricinus communis]
17 Hb_100525_010 0.1935893718 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
18 Hb_001493_010 0.1974117622 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
19 Hb_006711_070 0.1987844042 - - hypothetical protein RCOM_1336320 [Ricinus communis]
20 Hb_000768_010 0.1994851773 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]

Gene co-expression network

sample Hb_006420_020 Hb_006420_020 Hb_000571_150 Hb_000571_150 Hb_006420_020--Hb_000571_150 Hb_080147_080 Hb_080147_080 Hb_006420_020--Hb_080147_080 Hb_000878_100 Hb_000878_100 Hb_006420_020--Hb_000878_100 Hb_003125_030 Hb_003125_030 Hb_006420_020--Hb_003125_030 Hb_010831_020 Hb_010831_020 Hb_006420_020--Hb_010831_020 Hb_006745_010 Hb_006745_010 Hb_006420_020--Hb_006745_010 Hb_100525_010 Hb_100525_010 Hb_000571_150--Hb_100525_010 Hb_059641_010 Hb_059641_010 Hb_000571_150--Hb_059641_010 Hb_000571_150--Hb_006745_010 Hb_049958_010 Hb_049958_010 Hb_000571_150--Hb_049958_010 Hb_000979_240 Hb_000979_240 Hb_000571_150--Hb_000979_240 Hb_075449_020 Hb_075449_020 Hb_080147_080--Hb_075449_020 Hb_128376_010 Hb_128376_010 Hb_080147_080--Hb_128376_010 Hb_000390_220 Hb_000390_220 Hb_080147_080--Hb_000390_220 Hb_080147_080--Hb_000878_100 Hb_002742_080 Hb_002742_080 Hb_080147_080--Hb_002742_080 Hb_000768_010 Hb_000768_010 Hb_000878_100--Hb_000768_010 Hb_011465_030 Hb_011465_030 Hb_000878_100--Hb_011465_030 Hb_000265_250 Hb_000265_250 Hb_000878_100--Hb_000265_250 Hb_040600_010 Hb_040600_010 Hb_000878_100--Hb_040600_010 Hb_104265_030 Hb_104265_030 Hb_003125_030--Hb_104265_030 Hb_012226_010 Hb_012226_010 Hb_003125_030--Hb_012226_010 Hb_003506_070 Hb_003506_070 Hb_003125_030--Hb_003506_070 Hb_000540_120 Hb_000540_120 Hb_003125_030--Hb_000540_120 Hb_001525_010 Hb_001525_010 Hb_003125_030--Hb_001525_010 Hb_000327_280 Hb_000327_280 Hb_003125_030--Hb_000327_280 Hb_001638_040 Hb_001638_040 Hb_010831_020--Hb_001638_040 Hb_010831_020--Hb_000540_120 Hb_001691_150 Hb_001691_150 Hb_010831_020--Hb_001691_150 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_002739_150 Hb_002739_150 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010 Hb_030827_060 Hb_030827_060 Hb_006745_010--Hb_030827_060 Hb_000422_110 Hb_000422_110 Hb_006745_010--Hb_000422_110 Hb_001307_010 Hb_001307_010 Hb_006745_010--Hb_001307_010 Hb_004648_070 Hb_004648_070 Hb_006745_010--Hb_004648_070 Hb_006745_010--Hb_000979_240 Hb_002999_060 Hb_002999_060 Hb_006745_010--Hb_002999_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.4675 142.661 15.7855 64.6142 50.6878 58.8009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7302 8.85657 11.3351 4.16683 10.7252

CAGE analysis