Hb_006420_080

Information

Type rubber biosynthesis
Description Gene Name: Pyruvate dehydrogenase
Location Contig6420: 94469-99633
Sequence    

Annotation

kegg
ID rcu:RCOM_0699730
description pyruvate dehydrogenase, putative (EC:1.2.4.1)
nr
ID XP_012092011.1
description PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID P52901
description Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=E1 ALPHA PE=2 SV=2
trembl
ID A0A067JBT3
description Pyruvate dehydrogenase E1 component subunit alpha OS=Jatropha curcas GN=JCGZ_21747 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pyruvate dehydrogenase e1 component subunit mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52207: 94581-99660 , PASA_asmbl_52208: 96617-97111 , PASA_asmbl_52209: 98487-99136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006420_080 0.0 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_015778_010 0.0614621718 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
3 Hb_010883_050 0.0660237288 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
4 Hb_001902_140 0.0669286826 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
5 Hb_000982_080 0.0720243792 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
6 Hb_001489_080 0.073465483 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_003697_040 0.0744715047 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
8 Hb_000477_060 0.0748475723 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
9 Hb_004934_100 0.07546252 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005305_110 0.0766643276 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
11 Hb_005488_200 0.0772966031 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
12 Hb_011344_190 0.0775395753 - - PREDICTED: maspardin [Jatropha curcas]
13 Hb_076233_040 0.0785346784 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
14 Hb_001195_200 0.0807238394 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
15 Hb_003502_060 0.0816633685 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
16 Hb_002014_020 0.0817395862 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
17 Hb_000703_350 0.0821570614 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
18 Hb_000599_250 0.0824204491 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
19 Hb_008453_030 0.0828071916 - - Thioredoxin superfamily protein [Theobroma cacao]
20 Hb_004078_040 0.0833760489 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]

Gene co-expression network

sample Hb_006420_080 Hb_006420_080 Hb_015778_010 Hb_015778_010 Hb_006420_080--Hb_015778_010 Hb_010883_050 Hb_010883_050 Hb_006420_080--Hb_010883_050 Hb_001902_140 Hb_001902_140 Hb_006420_080--Hb_001902_140 Hb_000982_080 Hb_000982_080 Hb_006420_080--Hb_000982_080 Hb_001489_080 Hb_001489_080 Hb_006420_080--Hb_001489_080 Hb_003697_040 Hb_003697_040 Hb_006420_080--Hb_003697_040 Hb_002007_210 Hb_002007_210 Hb_015778_010--Hb_002007_210 Hb_003502_060 Hb_003502_060 Hb_015778_010--Hb_003502_060 Hb_000414_130 Hb_000414_130 Hb_015778_010--Hb_000414_130 Hb_005306_180 Hb_005306_180 Hb_015778_010--Hb_005306_180 Hb_011344_190 Hb_011344_190 Hb_015778_010--Hb_011344_190 Hb_000436_130 Hb_000436_130 Hb_010883_050--Hb_000436_130 Hb_010883_050--Hb_002007_210 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_010883_050--Hb_003697_040 Hb_000703_350 Hb_000703_350 Hb_001902_140--Hb_000703_350 Hb_003050_220 Hb_003050_220 Hb_001902_140--Hb_003050_220 Hb_032202_190 Hb_032202_190 Hb_001902_140--Hb_032202_190 Hb_000684_470 Hb_000684_470 Hb_001902_140--Hb_000684_470 Hb_005463_100 Hb_005463_100 Hb_001902_140--Hb_005463_100 Hb_003376_250 Hb_003376_250 Hb_000982_080--Hb_003376_250 Hb_000982_080--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_000982_080--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_000982_080--Hb_001195_200 Hb_008232_010 Hb_008232_010 Hb_000982_080--Hb_008232_010 Hb_000985_030 Hb_000985_030 Hb_001489_080--Hb_000985_030 Hb_004934_100 Hb_004934_100 Hb_001489_080--Hb_004934_100 Hb_000783_020 Hb_000783_020 Hb_001489_080--Hb_000783_020 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_002169_040 Hb_002169_040 Hb_001489_080--Hb_002169_040 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_003697_040--Hb_000783_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8008 20.0106 25.3671 40.822 22.9358 23.5017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.3927 50.5854 55.8805 37.6849 35.7236

CAGE analysis