Hb_006420_090

Information

Type -
Description -
Location Contig6420: 105835-106590
Sequence    

Annotation

kegg
ID rcu:RCOM_0699890
description hypothetical protein
nr
ID XP_012092029.1
description PREDICTED: zinc finger protein 5 [Jatropha curcas]
swissprot
ID Q39264
description Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1
trembl
ID A0A067JEW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21764 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006420_090 0.0 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
2 Hb_007101_290 0.1887633123 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
3 Hb_026527_020 0.2063236038 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
4 Hb_007317_080 0.2284414998 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
5 Hb_105328_030 0.2428579845 - - Putative retroelement [Oryza sativa Japonica Group]
6 Hb_000300_130 0.2459935177 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
7 Hb_000836_490 0.2654165848 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
8 Hb_002284_190 0.2683273424 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
9 Hb_000317_360 0.2684744491 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
10 Hb_001079_020 0.2775731578 - - hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
11 Hb_003052_230 0.2778716235 - - conserved hypothetical protein [Ricinus communis]
12 Hb_080147_100 0.2823286702 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
13 Hb_001720_060 0.2873198846 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
14 Hb_003435_060 0.287445051 - - carbonic anhydrase, putative [Ricinus communis]
15 Hb_002253_060 0.2881255731 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007885_050 0.2891658462 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
17 Hb_000032_580 0.2904964805 - - hypothetical protein RCOM_1311780 [Ricinus communis]
18 Hb_004460_050 0.2938229938 - - chaperone protein DNAj, putative [Ricinus communis]
19 Hb_000237_240 0.2969257926 - - -
20 Hb_031527_060 0.2986978799 - - glutamate decarboxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006420_090 Hb_006420_090 Hb_007101_290 Hb_007101_290 Hb_006420_090--Hb_007101_290 Hb_026527_020 Hb_026527_020 Hb_006420_090--Hb_026527_020 Hb_007317_080 Hb_007317_080 Hb_006420_090--Hb_007317_080 Hb_105328_030 Hb_105328_030 Hb_006420_090--Hb_105328_030 Hb_000300_130 Hb_000300_130 Hb_006420_090--Hb_000300_130 Hb_000836_490 Hb_000836_490 Hb_006420_090--Hb_000836_490 Hb_001703_110 Hb_001703_110 Hb_007101_290--Hb_001703_110 Hb_003960_020 Hb_003960_020 Hb_007101_290--Hb_003960_020 Hb_000032_580 Hb_000032_580 Hb_007101_290--Hb_000032_580 Hb_002918_130 Hb_002918_130 Hb_007101_290--Hb_002918_130 Hb_008479_020 Hb_008479_020 Hb_007101_290--Hb_008479_020 Hb_007885_050 Hb_007885_050 Hb_026527_020--Hb_007885_050 Hb_001268_130 Hb_001268_130 Hb_026527_020--Hb_001268_130 Hb_011016_010 Hb_011016_010 Hb_026527_020--Hb_011016_010 Hb_026527_020--Hb_000836_490 Hb_003038_170 Hb_003038_170 Hb_026527_020--Hb_003038_170 Hb_002374_380 Hb_002374_380 Hb_007317_080--Hb_002374_380 Hb_000694_060 Hb_000694_060 Hb_007317_080--Hb_000694_060 Hb_021888_120 Hb_021888_120 Hb_007317_080--Hb_021888_120 Hb_000270_740 Hb_000270_740 Hb_007317_080--Hb_000270_740 Hb_017170_030 Hb_017170_030 Hb_007317_080--Hb_017170_030 Hb_001675_030 Hb_001675_030 Hb_007317_080--Hb_001675_030 Hb_080147_100 Hb_080147_100 Hb_105328_030--Hb_080147_100 Hb_001504_120 Hb_001504_120 Hb_105328_030--Hb_001504_120 Hb_031527_060 Hb_031527_060 Hb_105328_030--Hb_031527_060 Hb_000317_360 Hb_000317_360 Hb_105328_030--Hb_000317_360 Hb_004460_050 Hb_004460_050 Hb_105328_030--Hb_004460_050 Hb_000300_130--Hb_031527_060 Hb_009545_020 Hb_009545_020 Hb_000300_130--Hb_009545_020 Hb_000165_210 Hb_000165_210 Hb_000300_130--Hb_000165_210 Hb_001206_090 Hb_001206_090 Hb_000300_130--Hb_001206_090 Hb_183623_010 Hb_183623_010 Hb_000300_130--Hb_183623_010 Hb_001148_030 Hb_001148_030 Hb_000300_130--Hb_001148_030 Hb_000836_490--Hb_007885_050 Hb_003777_360 Hb_003777_360 Hb_000836_490--Hb_003777_360 Hb_000594_090 Hb_000594_090 Hb_000836_490--Hb_000594_090 Hb_004208_130 Hb_004208_130 Hb_000836_490--Hb_004208_130 Hb_028271_020 Hb_028271_020 Hb_000836_490--Hb_028271_020 Hb_000117_100 Hb_000117_100 Hb_000836_490--Hb_000117_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142708 1.96748 0 1.26271 0.0296416 0.0394598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.946388 8.12768 0.823799 8.77532 0.228439

CAGE analysis