Hb_006420_100

Information

Type -
Description -
Location Contig6420: 112190-122625
Sequence    

Annotation

kegg
ID rcu:RCOM_0699880
description hypothetical protein
nr
ID XP_012092028.1
description PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21763 PE=4 SV=1
Gene Ontology
ID GO:0005524
description sterile alpha motif domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52210: 112612-122601 , PASA_asmbl_52211: 118309-118654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006420_100 0.0 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
2 Hb_000072_180 0.0579024876 - - PREDICTED: EVI5-like protein [Jatropha curcas]
3 Hb_002111_040 0.079386015 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
4 Hb_000046_350 0.0833693709 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002183_060 0.0907872435 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
6 Hb_001545_170 0.0908280729 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
7 Hb_000023_090 0.0941875946 - - mak, putative [Ricinus communis]
8 Hb_003697_040 0.0969480413 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
9 Hb_005305_150 0.0978905067 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
10 Hb_148113_010 0.0983393775 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
11 Hb_000346_040 0.0985252095 - - -
12 Hb_001484_010 0.0994424572 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
13 Hb_000291_080 0.0994679121 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
14 Hb_001222_080 0.0998417724 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
15 Hb_005488_200 0.1001774185 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
16 Hb_005092_060 0.1002181769 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
17 Hb_019654_030 0.100438498 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
18 Hb_003376_250 0.1004974596 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
19 Hb_000982_080 0.1005080814 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
20 Hb_000120_460 0.1007318485 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]

Gene co-expression network

sample Hb_006420_100 Hb_006420_100 Hb_000072_180 Hb_000072_180 Hb_006420_100--Hb_000072_180 Hb_002111_040 Hb_002111_040 Hb_006420_100--Hb_002111_040 Hb_000046_350 Hb_000046_350 Hb_006420_100--Hb_000046_350 Hb_002183_060 Hb_002183_060 Hb_006420_100--Hb_002183_060 Hb_001545_170 Hb_001545_170 Hb_006420_100--Hb_001545_170 Hb_000023_090 Hb_000023_090 Hb_006420_100--Hb_000023_090 Hb_000072_180--Hb_000046_350 Hb_004672_010 Hb_004672_010 Hb_000072_180--Hb_004672_010 Hb_028515_010 Hb_028515_010 Hb_000072_180--Hb_028515_010 Hb_027625_010 Hb_027625_010 Hb_000072_180--Hb_027625_010 Hb_148113_010 Hb_148113_010 Hb_000072_180--Hb_148113_010 Hb_000291_080 Hb_000291_080 Hb_002111_040--Hb_000291_080 Hb_005305_110 Hb_005305_110 Hb_002111_040--Hb_005305_110 Hb_000028_350 Hb_000028_350 Hb_002111_040--Hb_000028_350 Hb_031862_100 Hb_031862_100 Hb_002111_040--Hb_031862_100 Hb_001390_130 Hb_001390_130 Hb_002111_040--Hb_001390_130 Hb_000046_350--Hb_004672_010 Hb_001222_080 Hb_001222_080 Hb_000046_350--Hb_001222_080 Hb_001284_030 Hb_001284_030 Hb_000046_350--Hb_001284_030 Hb_000046_350--Hb_148113_010 Hb_000421_220 Hb_000421_220 Hb_002183_060--Hb_000421_220 Hb_001386_040 Hb_001386_040 Hb_002183_060--Hb_001386_040 Hb_008453_030 Hb_008453_030 Hb_002183_060--Hb_008453_030 Hb_015934_070 Hb_015934_070 Hb_002183_060--Hb_015934_070 Hb_002183_060--Hb_031862_100 Hb_003697_040 Hb_003697_040 Hb_002183_060--Hb_003697_040 Hb_012490_070 Hb_012490_070 Hb_001545_170--Hb_012490_070 Hb_089032_030 Hb_089032_030 Hb_001545_170--Hb_089032_030 Hb_000120_460 Hb_000120_460 Hb_001545_170--Hb_000120_460 Hb_003349_090 Hb_003349_090 Hb_001545_170--Hb_003349_090 Hb_010812_120 Hb_010812_120 Hb_001545_170--Hb_010812_120 Hb_002676_090 Hb_002676_090 Hb_001545_170--Hb_002676_090 Hb_002005_020 Hb_002005_020 Hb_000023_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000023_090--Hb_004218_110 Hb_000023_090--Hb_148113_010 Hb_000477_060 Hb_000477_060 Hb_000023_090--Hb_000477_060 Hb_000363_360 Hb_000363_360 Hb_000023_090--Hb_000363_360 Hb_000023_090--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.77958 4.77056 3.83236 12.3355 7.43955 12.4949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2767 24.7884 20.4842 18.2302 13.3388

CAGE analysis