Hb_006429_010

Information

Type -
Description -
Location Contig6429: 26429-27086
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05440g
description hypothetical protein
nr
ID XP_012079256.1
description PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17408 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52217: 26972-77888 , PASA_asmbl_52218: 26838-45930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006429_010 0.0 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
2 Hb_000479_190 0.0744862037 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003092_030 0.07989558 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
4 Hb_001205_150 0.0800787417 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
5 Hb_004218_110 0.081053228 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
6 Hb_002759_060 0.0810620095 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
7 Hb_037887_010 0.0831364294 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
8 Hb_025240_040 0.083525411 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
9 Hb_000976_410 0.08515857 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
10 Hb_000363_360 0.0871214608 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
11 Hb_003697_040 0.0871331327 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
12 Hb_000477_060 0.0874038957 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
13 Hb_000635_150 0.0894315769 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
14 Hb_000898_050 0.0898051137 - - -
15 Hb_000985_060 0.0898558155 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
16 Hb_002005_020 0.0927549577 - - conserved hypothetical protein [Ricinus communis]
17 Hb_064441_010 0.0932827166 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
18 Hb_001235_030 0.0940204813 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
19 Hb_092337_010 0.0961348612 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
20 Hb_002182_080 0.0969546397 - - 3-5 exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_006429_010 Hb_006429_010 Hb_000479_190 Hb_000479_190 Hb_006429_010--Hb_000479_190 Hb_003092_030 Hb_003092_030 Hb_006429_010--Hb_003092_030 Hb_001205_150 Hb_001205_150 Hb_006429_010--Hb_001205_150 Hb_004218_110 Hb_004218_110 Hb_006429_010--Hb_004218_110 Hb_002759_060 Hb_002759_060 Hb_006429_010--Hb_002759_060 Hb_037887_010 Hb_037887_010 Hb_006429_010--Hb_037887_010 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_003502_090 Hb_003502_090 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_006198_080 Hb_006198_080 Hb_003092_030--Hb_006198_080 Hb_000700_110 Hb_000700_110 Hb_003092_030--Hb_000700_110 Hb_021238_050 Hb_021238_050 Hb_003092_030--Hb_021238_050 Hb_003092_030--Hb_037887_010 Hb_000898_050 Hb_000898_050 Hb_003092_030--Hb_000898_050 Hb_000692_220 Hb_000692_220 Hb_001205_150--Hb_000692_220 Hb_010174_020 Hb_010174_020 Hb_001205_150--Hb_010174_020 Hb_001205_150--Hb_003502_090 Hb_000161_060 Hb_000161_060 Hb_001205_150--Hb_000161_060 Hb_004218_110--Hb_002759_060 Hb_025240_040 Hb_025240_040 Hb_004218_110--Hb_025240_040 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_002005_020 Hb_002005_020 Hb_004218_110--Hb_002005_020 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_000083_170 Hb_000083_170 Hb_037887_010--Hb_000083_170 Hb_037887_010--Hb_000898_050 Hb_037887_010--Hb_006198_080 Hb_037887_010--Hb_001584_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.68474 2.85077 2.77378 8.22036 3.62529 10.9933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.22467 11.5658 12.4057 6.75052 5.06281

CAGE analysis