Hb_006441_020

Information

Type -
Description -
Location Contig6441: 39084-45919
Sequence    

Annotation

kegg
ID tcc:TCM_039368
description Cadmium/zinc-transporting ATPase 3 isoform 1
nr
ID XP_011019985.1
description PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
swissprot
ID Q9SZW4
description Cadmium/zinc-transporting ATPase HMA2 OS=Arabidopsis thaliana GN=HMA2 PE=2 SV=1
trembl
ID U5GC12
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07650g PE=3 SV=1
Gene Ontology
ID GO:0016021
description inactive cadmium zinc-transporting atpase hma3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52225: 39077-45597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006441_020 0.0 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
2 Hb_013057_020 0.0922682542 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
3 Hb_006922_050 0.1206570778 - - PREDICTED: dipeptidyl peptidase 8 [Jatropha curcas]
4 Hb_005188_030 0.1228337235 - - amino acid transporter, putative [Ricinus communis]
5 Hb_002307_270 0.123941406 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
6 Hb_017387_010 0.1256666104 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
7 Hb_002915_060 0.1268456732 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
8 Hb_008246_020 0.1270580328 - - amidophosphoribosyltransferase, putative [Ricinus communis]
9 Hb_003688_180 0.127305159 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
10 Hb_009627_030 0.1273793835 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
11 Hb_000997_180 0.1276200553 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005215_020 0.1291739047 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
13 Hb_001411_140 0.1301785354 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
14 Hb_003747_210 0.1306788937 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
15 Hb_001157_200 0.1322254009 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
16 Hb_000836_380 0.1346337693 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
17 Hb_001328_080 0.1348793964 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
18 Hb_000215_320 0.1350241103 - - phosphofructokinase [Hevea brasiliensis]
19 Hb_000625_090 0.1355226466 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007017_040 0.1362097331 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]

Gene co-expression network

sample Hb_006441_020 Hb_006441_020 Hb_013057_020 Hb_013057_020 Hb_006441_020--Hb_013057_020 Hb_006922_050 Hb_006922_050 Hb_006441_020--Hb_006922_050 Hb_005188_030 Hb_005188_030 Hb_006441_020--Hb_005188_030 Hb_002307_270 Hb_002307_270 Hb_006441_020--Hb_002307_270 Hb_017387_010 Hb_017387_010 Hb_006441_020--Hb_017387_010 Hb_002915_060 Hb_002915_060 Hb_006441_020--Hb_002915_060 Hb_000836_280 Hb_000836_280 Hb_013057_020--Hb_000836_280 Hb_000983_050 Hb_000983_050 Hb_013057_020--Hb_000983_050 Hb_023344_150 Hb_023344_150 Hb_013057_020--Hb_023344_150 Hb_002781_030 Hb_002781_030 Hb_013057_020--Hb_002781_030 Hb_004480_020 Hb_004480_020 Hb_013057_020--Hb_004480_020 Hb_003544_030 Hb_003544_030 Hb_006922_050--Hb_003544_030 Hb_006922_050--Hb_017387_010 Hb_003373_030 Hb_003373_030 Hb_006922_050--Hb_003373_030 Hb_003776_060 Hb_003776_060 Hb_006922_050--Hb_003776_060 Hb_010775_040 Hb_010775_040 Hb_006922_050--Hb_010775_040 Hb_023771_010 Hb_023771_010 Hb_006922_050--Hb_023771_010 Hb_007409_040 Hb_007409_040 Hb_005188_030--Hb_007409_040 Hb_003078_020 Hb_003078_020 Hb_005188_030--Hb_003078_020 Hb_000931_020 Hb_000931_020 Hb_005188_030--Hb_000931_020 Hb_000802_090 Hb_000802_090 Hb_005188_030--Hb_000802_090 Hb_000815_240 Hb_000815_240 Hb_005188_030--Hb_000815_240 Hb_000836_380 Hb_000836_380 Hb_002307_270--Hb_000836_380 Hb_001411_140 Hb_001411_140 Hb_002307_270--Hb_001411_140 Hb_000964_130 Hb_000964_130 Hb_002307_270--Hb_000964_130 Hb_001405_160 Hb_001405_160 Hb_002307_270--Hb_001405_160 Hb_001217_050 Hb_001217_050 Hb_002307_270--Hb_001217_050 Hb_000173_470 Hb_000173_470 Hb_002307_270--Hb_000173_470 Hb_006452_120 Hb_006452_120 Hb_017387_010--Hb_006452_120 Hb_001221_430 Hb_001221_430 Hb_017387_010--Hb_001221_430 Hb_017387_010--Hb_003544_030 Hb_000574_450 Hb_000574_450 Hb_017387_010--Hb_000574_450 Hb_001434_080 Hb_001434_080 Hb_017387_010--Hb_001434_080 Hb_000962_030 Hb_000962_030 Hb_017387_010--Hb_000962_030 Hb_001328_080 Hb_001328_080 Hb_002915_060--Hb_001328_080 Hb_007839_020 Hb_007839_020 Hb_002915_060--Hb_007839_020 Hb_011360_050 Hb_011360_050 Hb_002915_060--Hb_011360_050 Hb_005215_020 Hb_005215_020 Hb_002915_060--Hb_005215_020 Hb_002915_060--Hb_023344_150 Hb_002982_020 Hb_002982_020 Hb_002915_060--Hb_002982_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.34331 20.5547 4.45166 23.8975 6.94454 4.93484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.59836 11.3796 9.34518 14.934 8.08082

CAGE analysis