Hb_006445_020

Information

Type -
Description -
Location Contig6445: 22874-25023
Sequence    

Annotation

kegg
ID pda:103721908
description glycine-rich protein A3-like
nr
ID XP_010113408.1
description hypothetical protein L484_026741 [Morus notabilis]
swissprot
ID P37705
description Glycine-rich protein A3 OS=Daucus carota PE=2 SV=1
trembl
ID W9T0Y5
description Uncharacterized protein OS=Morus notabilis GN=L484_026741 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52237: 23278-25320 , PASA_asmbl_52238: 23278-25317
cDNA
(Sanger)
(ID:Location)		 025_A20.ab1: 23666-25320

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006445_020 0.0 - - hypothetical protein L484_026741 [Morus notabilis]
2 Hb_068194_010 0.1117900903 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
3 Hb_027506_040 0.1209850567 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
4 Hb_002205_140 0.1294211984 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
5 Hb_000676_020 0.130618961 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
6 Hb_003602_060 0.1394088975 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
7 Hb_118282_010 0.1407094725 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
8 Hb_154038_020 0.1411363465 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
9 Hb_005332_080 0.1415449763 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
10 Hb_002333_070 0.143181725 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
11 Hb_021576_150 0.1432797567 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
12 Hb_030627_070 0.1437156358 - - histone H4 [Zea mays]
13 Hb_000189_130 0.1470247074 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
14 Hb_001804_090 0.147532021 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
15 Hb_002534_130 0.1475661576 - - membrane associated ring finger 1,8, putative [Ricinus communis]
16 Hb_013405_070 0.1477139737 - - ferric-chelate reductase, putative [Ricinus communis]
17 Hb_000235_070 0.147791481 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
18 Hb_007741_130 0.1486962473 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
19 Hb_000923_060 0.1489521652 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
20 Hb_001102_050 0.149113853 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_006445_020 Hb_006445_020 Hb_068194_010 Hb_068194_010 Hb_006445_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_006445_020--Hb_027506_040 Hb_002205_140 Hb_002205_140 Hb_006445_020--Hb_002205_140 Hb_000676_020 Hb_000676_020 Hb_006445_020--Hb_000676_020 Hb_003602_060 Hb_003602_060 Hb_006445_020--Hb_003602_060 Hb_118282_010 Hb_118282_010 Hb_006445_020--Hb_118282_010 Hb_068194_010--Hb_000676_020 Hb_000820_140 Hb_000820_140 Hb_068194_010--Hb_000820_140 Hb_009851_010 Hb_009851_010 Hb_068194_010--Hb_009851_010 Hb_001102_050 Hb_001102_050 Hb_068194_010--Hb_001102_050 Hb_001322_230 Hb_001322_230 Hb_068194_010--Hb_001322_230 Hb_000926_080 Hb_000926_080 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_002205_140--Hb_000676_020 Hb_000364_170 Hb_000364_170 Hb_002205_140--Hb_000364_170 Hb_019654_050 Hb_019654_050 Hb_002205_140--Hb_019654_050 Hb_011381_040 Hb_011381_040 Hb_002205_140--Hb_011381_040 Hb_013405_070 Hb_013405_070 Hb_002205_140--Hb_013405_070 Hb_002205_140--Hb_027506_040 Hb_000676_020--Hb_027506_040 Hb_002498_160 Hb_002498_160 Hb_000676_020--Hb_002498_160 Hb_000676_020--Hb_009851_010 Hb_000676_020--Hb_000820_140 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_001863_070 Hb_001863_070 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_000025_370 Hb_000025_370 Hb_118282_010--Hb_000025_370 Hb_011053_010 Hb_011053_010 Hb_118282_010--Hb_011053_010 Hb_000740_040 Hb_000740_040 Hb_118282_010--Hb_000740_040 Hb_002909_020 Hb_002909_020 Hb_118282_010--Hb_002909_020 Hb_001073_080 Hb_001073_080 Hb_118282_010--Hb_001073_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6473 44.4654 235.908 109.283 12.3501 18.4175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.7147 75.0426 58.473 43.0543 75.5933

CAGE analysis