Hb_006446_060

Information

Type -
Description -
Location Contig6446: 92102-94170
Sequence    

Annotation

kegg
ID cit:102623788
description probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like
nr
ID XP_011013756.1
description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
swissprot
ID O04567
description Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1
trembl
ID U5FH39
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03660g PE=4 SV=1
Gene Ontology
ID GO:0016772
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006446_060 0.0 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
2 Hb_000101_050 0.0513226736 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
3 Hb_041769_010 0.0568322426 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
4 Hb_001621_140 0.0620049842 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
5 Hb_005993_070 0.0736220754 - - lipid binding protein, putative [Ricinus communis]
6 Hb_161393_010 0.0750812572 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_005653_020 0.0780129803 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
8 Hb_002553_120 0.0807458864 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
9 Hb_001902_180 0.0813537574 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
10 Hb_005731_080 0.084224903 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_059162_010 0.0911904497 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_047163_010 0.0925416382 - - PREDICTED: periaxin-like [Populus euphratica]
13 Hb_011628_030 0.1017451406 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002743_030 0.1064829598 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
15 Hb_004109_300 0.1111869638 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
16 Hb_002311_050 0.1112634144 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
17 Hb_002081_040 0.1115514721 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
18 Hb_000522_040 0.1154393889 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
19 Hb_004195_040 0.1164264598 - - salicylic acid methyl transferase [Capsicum annuum]
20 Hb_004185_040 0.1167564187 - - polygalacturonase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006446_060 Hb_006446_060 Hb_000101_050 Hb_000101_050 Hb_006446_060--Hb_000101_050 Hb_041769_010 Hb_041769_010 Hb_006446_060--Hb_041769_010 Hb_001621_140 Hb_001621_140 Hb_006446_060--Hb_001621_140 Hb_005993_070 Hb_005993_070 Hb_006446_060--Hb_005993_070 Hb_161393_010 Hb_161393_010 Hb_006446_060--Hb_161393_010 Hb_005653_020 Hb_005653_020 Hb_006446_060--Hb_005653_020 Hb_000101_050--Hb_041769_010 Hb_001902_180 Hb_001902_180 Hb_000101_050--Hb_001902_180 Hb_000101_050--Hb_005993_070 Hb_005731_080 Hb_005731_080 Hb_000101_050--Hb_005731_080 Hb_059162_010 Hb_059162_010 Hb_000101_050--Hb_059162_010 Hb_041769_010--Hb_161393_010 Hb_041769_010--Hb_059162_010 Hb_041769_010--Hb_001621_140 Hb_004185_040 Hb_004185_040 Hb_041769_010--Hb_004185_040 Hb_001621_140--Hb_161393_010 Hb_001621_140--Hb_005653_020 Hb_002081_040 Hb_002081_040 Hb_001621_140--Hb_002081_040 Hb_003074_070 Hb_003074_070 Hb_001621_140--Hb_003074_070 Hb_005993_070--Hb_005731_080 Hb_005993_070--Hb_001902_180 Hb_002743_030 Hb_002743_030 Hb_005993_070--Hb_002743_030 Hb_125876_010 Hb_125876_010 Hb_005993_070--Hb_125876_010 Hb_161393_010--Hb_002081_040 Hb_161393_010--Hb_005653_020 Hb_002553_120 Hb_002553_120 Hb_161393_010--Hb_002553_120 Hb_005653_020--Hb_002553_120 Hb_005653_020--Hb_002081_040 Hb_005653_020--Hb_041769_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.69313 0.0321284 0.0778144 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.80023 0.0397598

CAGE analysis