Hb_006447_010

Information

Type -
Description -
Location Contig6447: 11889-19541
Sequence    

Annotation

kegg
ID rcu:RCOM_1550320
description hypothetical protein
nr
ID XP_012086381.1
description PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
swissprot
ID Q9LSX7
description Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22 PE=1 SV=1
trembl
ID A0A067JPH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22896 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52243: 11885-19553 , PASA_asmbl_52244: 13595-13892
cDNA
(Sanger)
(ID:Location)		 002_A03.ab1: 16152-19547 , 009_G05.ab1: 16185-19553

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006447_010 0.0 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
2 Hb_001246_100 0.0623304463 - - Ras-related small GTP-binding family protein [Theobroma cacao]
3 Hb_001243_050 0.06615184 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
4 Hb_000442_160 0.069828663 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
5 Hb_001030_120 0.0712177058 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
6 Hb_133271_020 0.0732350546 - - prohibitin, putative [Ricinus communis]
7 Hb_012340_030 0.0759187036 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
8 Hb_005063_040 0.0768717039 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
9 Hb_000200_210 0.0782844707 - - conserved hypothetical protein [Ricinus communis]
10 Hb_158092_070 0.0790101386 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
11 Hb_000500_130 0.0793137911 - - small GTPase [Hevea brasiliensis]
12 Hb_033491_010 0.0798008553 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
13 Hb_000975_290 0.0813966637 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
14 Hb_118977_020 0.0821214226 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
15 Hb_002762_060 0.0824536105 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
16 Hb_022250_040 0.0825581352 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
17 Hb_001369_060 0.0826378102 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
18 Hb_001454_140 0.0831616524 - - protein arginine n-methyltransferase, putative [Ricinus communis]
19 Hb_000386_040 0.0832300148 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_002686_270 0.0834943633 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006447_010 Hb_006447_010 Hb_001246_100 Hb_001246_100 Hb_006447_010--Hb_001246_100 Hb_001243_050 Hb_001243_050 Hb_006447_010--Hb_001243_050 Hb_000442_160 Hb_000442_160 Hb_006447_010--Hb_000442_160 Hb_001030_120 Hb_001030_120 Hb_006447_010--Hb_001030_120 Hb_133271_020 Hb_133271_020 Hb_006447_010--Hb_133271_020 Hb_012340_030 Hb_012340_030 Hb_006447_010--Hb_012340_030 Hb_001454_140 Hb_001454_140 Hb_001246_100--Hb_001454_140 Hb_007193_100 Hb_007193_100 Hb_001246_100--Hb_007193_100 Hb_000386_040 Hb_000386_040 Hb_001246_100--Hb_000386_040 Hb_000175_070 Hb_000175_070 Hb_001246_100--Hb_000175_070 Hb_143813_010 Hb_143813_010 Hb_001246_100--Hb_143813_010 Hb_000376_050 Hb_000376_050 Hb_001243_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_001243_050--Hb_002603_100 Hb_001671_020 Hb_001671_020 Hb_001243_050--Hb_001671_020 Hb_022250_040 Hb_022250_040 Hb_001243_050--Hb_022250_040 Hb_002307_030 Hb_002307_030 Hb_001243_050--Hb_002307_030 Hb_000365_360 Hb_000365_360 Hb_000442_160--Hb_000365_360 Hb_000749_150 Hb_000749_150 Hb_000442_160--Hb_000749_150 Hb_000442_160--Hb_133271_020 Hb_000442_160--Hb_001246_100 Hb_010608_010 Hb_010608_010 Hb_000442_160--Hb_010608_010 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_158092_070 Hb_158092_070 Hb_133271_020--Hb_158092_070 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_000975_290 Hb_000975_290 Hb_133271_020--Hb_000975_290 Hb_133271_020--Hb_001030_120 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_168918_020 Hb_168918_020 Hb_012340_030--Hb_168918_020 Hb_001823_100 Hb_001823_100 Hb_012340_030--Hb_001823_100 Hb_000107_390 Hb_000107_390 Hb_012340_030--Hb_000107_390 Hb_000017_120 Hb_000017_120 Hb_012340_030--Hb_000017_120 Hb_002272_250 Hb_002272_250 Hb_012340_030--Hb_002272_250 Hb_118419_020 Hb_118419_020 Hb_012340_030--Hb_118419_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
244.282 80.4931 65.6193 61.4525 209.224 354.322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
289.854 238.886 214.574 71.1349 28.0246

CAGE analysis