Hb_006452_030

Information

Type transcription factor
Description TF Family: WRKY
Location Contig6452: 11671-14518
Sequence    

Annotation

kegg
ID rcu:RCOM_0992280
description WRKY transcription factor, putative
nr
ID XP_002520995.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID O04336
description Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1
trembl
ID B9S4T8
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0992280 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52291: 12073-14574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_030 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_002263_010 0.0775833426 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
3 Hb_030312_040 0.0808728703 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
4 Hb_004221_010 0.0873708412 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
5 Hb_003494_240 0.0963493445 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
6 Hb_005324_010 0.0975509506 - - Chaperone protein dnaJ, putative [Ricinus communis]
7 Hb_001047_020 0.0981947634 - - -
8 Hb_000370_030 0.100435142 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
9 Hb_000300_280 0.1008080263 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
10 Hb_004055_010 0.1016701926 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_000120_800 0.1049657827 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
12 Hb_001840_080 0.1058169268 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
13 Hb_001671_080 0.1077332961 - - amino acid binding protein, putative [Ricinus communis]
14 Hb_001141_080 0.1078713086 - - PREDICTED: protein RDM1 [Jatropha curcas]
15 Hb_158092_070 0.1085654695 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
16 Hb_003777_270 0.1087187902 - - 60S ribosomal protein L3B [Hevea brasiliensis]
17 Hb_022137_060 0.1096107019 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
18 Hb_002686_270 0.1114533675 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009382_020 0.111697664 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
20 Hb_003086_020 0.1117297528 - - hypothetical protein JCGZ_06091 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_030 Hb_006452_030 Hb_002263_010 Hb_002263_010 Hb_006452_030--Hb_002263_010 Hb_030312_040 Hb_030312_040 Hb_006452_030--Hb_030312_040 Hb_004221_010 Hb_004221_010 Hb_006452_030--Hb_004221_010 Hb_003494_240 Hb_003494_240 Hb_006452_030--Hb_003494_240 Hb_005324_010 Hb_005324_010 Hb_006452_030--Hb_005324_010 Hb_001047_020 Hb_001047_020 Hb_006452_030--Hb_001047_020 Hb_002263_010--Hb_030312_040 Hb_003086_020 Hb_003086_020 Hb_002263_010--Hb_003086_020 Hb_004242_100 Hb_004242_100 Hb_002263_010--Hb_004242_100 Hb_000152_140 Hb_000152_140 Hb_002263_010--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002263_010--Hb_001454_140 Hb_000703_080 Hb_000703_080 Hb_030312_040--Hb_000703_080 Hb_030312_040--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_030312_040--Hb_000608_120 Hb_008725_250 Hb_008725_250 Hb_030312_040--Hb_008725_250 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_002762_060 Hb_002762_060 Hb_004221_010--Hb_002762_060 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060 Hb_001454_060 Hb_001454_060 Hb_003494_240--Hb_001454_060 Hb_003494_240--Hb_000608_120 Hb_000703_090 Hb_000703_090 Hb_003494_240--Hb_000703_090 Hb_002215_050 Hb_002215_050 Hb_003494_240--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_003494_240--Hb_003638_140 Hb_005306_130 Hb_005306_130 Hb_005324_010--Hb_005306_130 Hb_004734_060 Hb_004734_060 Hb_005324_010--Hb_004734_060 Hb_000209_020 Hb_000209_020 Hb_005324_010--Hb_000209_020 Hb_000953_010 Hb_000953_010 Hb_005324_010--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_005324_010--Hb_000836_360 Hb_033152_080 Hb_033152_080 Hb_005324_010--Hb_033152_080 Hb_001840_080 Hb_001840_080 Hb_001047_020--Hb_001840_080 Hb_001047_020--Hb_002215_050 Hb_000120_800 Hb_000120_800 Hb_001047_020--Hb_000120_800 Hb_002686_270 Hb_002686_270 Hb_001047_020--Hb_002686_270 Hb_000446_090 Hb_000446_090 Hb_001047_020--Hb_000446_090 Hb_004046_010 Hb_004046_010 Hb_001047_020--Hb_004046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.211 56.9319 11.1675 28.9031 71.2281 163.51
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
144.534 64.4517 94.6675 57.142 12.9496

CAGE analysis