Hb_006452_090

Information

Type -
Description -
Location Contig6452: 50665-60372
Sequence    

Annotation

kegg
ID pxb:103958006
description eukaryotic translation initiation factor 5B-like
nr
ID XP_012066033.1
description PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
swissprot
ID Q10251
description Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.03 PE=1 SV=1
trembl
ID A0A067LFV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25190 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 5b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52300: 50684-60350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_090 0.0 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
2 Hb_002217_150 0.0941805354 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
3 Hb_000768_190 0.0996813867 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
4 Hb_003001_150 0.1082238865 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_126643_010 0.1119885383 - - Protein transport protein Sec24C, putative [Ricinus communis]
6 Hb_002291_070 0.1134370892 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
7 Hb_064903_010 0.1147700303 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
8 Hb_002471_210 0.1199495353 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
9 Hb_111985_080 0.1202943015 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
10 Hb_000832_130 0.1206558728 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
11 Hb_116929_010 0.1206851797 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
12 Hb_000037_110 0.1216483018 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
13 Hb_006449_050 0.1220446481 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
14 Hb_000250_070 0.122053935 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
15 Hb_003544_100 0.1226990907 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
16 Hb_000780_220 0.1241785982 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
17 Hb_000170_190 0.1256078703 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
18 Hb_007849_020 0.1261791988 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
19 Hb_000300_580 0.1262889893 - - PREDICTED: importin-5-like [Jatropha curcas]
20 Hb_007943_100 0.1285692886 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_006452_090 Hb_006452_090 Hb_002217_150 Hb_002217_150 Hb_006452_090--Hb_002217_150 Hb_000768_190 Hb_000768_190 Hb_006452_090--Hb_000768_190 Hb_003001_150 Hb_003001_150 Hb_006452_090--Hb_003001_150 Hb_126643_010 Hb_126643_010 Hb_006452_090--Hb_126643_010 Hb_002291_070 Hb_002291_070 Hb_006452_090--Hb_002291_070 Hb_064903_010 Hb_064903_010 Hb_006452_090--Hb_064903_010 Hb_003236_010 Hb_003236_010 Hb_002217_150--Hb_003236_010 Hb_007849_020 Hb_007849_020 Hb_002217_150--Hb_007849_020 Hb_002471_210 Hb_002471_210 Hb_002217_150--Hb_002471_210 Hb_001433_190 Hb_001433_190 Hb_002217_150--Hb_001433_190 Hb_002217_150--Hb_002291_070 Hb_000227_380 Hb_000227_380 Hb_002217_150--Hb_000227_380 Hb_000768_190--Hb_064903_010 Hb_000037_110 Hb_000037_110 Hb_000768_190--Hb_000037_110 Hb_003544_100 Hb_003544_100 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_008595_010 Hb_008595_010 Hb_000768_190--Hb_008595_010 Hb_006915_060 Hb_006915_060 Hb_000768_190--Hb_006915_060 Hb_003001_150--Hb_003544_100 Hb_002276_060 Hb_002276_060 Hb_003001_150--Hb_002276_060 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_001136_100 Hb_001136_100 Hb_003001_150--Hb_001136_100 Hb_000729_050 Hb_000729_050 Hb_003001_150--Hb_000729_050 Hb_003001_150--Hb_007943_100 Hb_002255_070 Hb_002255_070 Hb_126643_010--Hb_002255_070 Hb_126643_010--Hb_003544_100 Hb_000627_080 Hb_000627_080 Hb_126643_010--Hb_000627_080 Hb_126643_010--Hb_003052_150 Hb_116929_010 Hb_116929_010 Hb_126643_010--Hb_116929_010 Hb_003952_150 Hb_003952_150 Hb_126643_010--Hb_003952_150 Hb_002291_070--Hb_002471_210 Hb_002291_070--Hb_007849_020 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_000475_020 Hb_000475_020 Hb_002291_070--Hb_000475_020 Hb_000250_070 Hb_000250_070 Hb_002291_070--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002291_070--Hb_001322_210 Hb_111985_080 Hb_111985_080 Hb_064903_010--Hb_111985_080 Hb_002301_080 Hb_002301_080 Hb_064903_010--Hb_002301_080 Hb_003847_120 Hb_003847_120 Hb_064903_010--Hb_003847_120 Hb_000832_130 Hb_000832_130 Hb_064903_010--Hb_000832_130 Hb_003044_020 Hb_003044_020 Hb_064903_010--Hb_003044_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.429 66.0224 24.4813 36.3402 220.981 154.248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.6406 27.5144 84.0449 97.585 104.393

CAGE analysis