Hb_006452_100

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig6452: 62985-64307
Sequence    

Annotation

kegg
ID rcu:RCOM_0454040
description transcription factor, putative
nr
ID XP_012066032.1
description PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6X5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25189 PE=4 SV=1
Gene Ontology
ID GO:0003682
description sequence-specific dna binding transcription factors

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52302: 62612-62961 , PASA_asmbl_52303: 62214-62961 , PASA_asmbl_52304: 62099-62478 , PASA_asmbl_52305: 62229-62902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_100 0.0 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
2 Hb_023001_040 0.0717155853 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
3 Hb_001016_120 0.0787223474 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
4 Hb_000504_070 0.0807266108 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
5 Hb_004781_010 0.080896356 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
6 Hb_000853_150 0.082559773 - - Fumarase 1 isoform 2 [Theobroma cacao]
7 Hb_149985_010 0.0837322818 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
8 Hb_003058_120 0.0855046677 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
9 Hb_004108_220 0.0908694185 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
10 Hb_000049_210 0.0933807036 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
11 Hb_000483_260 0.0933811837 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
12 Hb_005914_170 0.0952567016 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
13 Hb_000574_450 0.0954163409 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
14 Hb_001500_140 0.0957206321 - - pelota, putative [Ricinus communis]
15 Hb_000460_030 0.0964904003 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
16 Hb_005306_180 0.0965247623 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
17 Hb_001999_310 0.0982625231 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
18 Hb_005588_060 0.0995627975 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
19 Hb_001671_100 0.1000746166 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
20 Hb_001584_120 0.1004770755 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_100 Hb_006452_100 Hb_023001_040 Hb_023001_040 Hb_006452_100--Hb_023001_040 Hb_001016_120 Hb_001016_120 Hb_006452_100--Hb_001016_120 Hb_000504_070 Hb_000504_070 Hb_006452_100--Hb_000504_070 Hb_004781_010 Hb_004781_010 Hb_006452_100--Hb_004781_010 Hb_000853_150 Hb_000853_150 Hb_006452_100--Hb_000853_150 Hb_149985_010 Hb_149985_010 Hb_006452_100--Hb_149985_010 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010 Hb_000116_270 Hb_000116_270 Hb_001016_120--Hb_000116_270 Hb_001016_120--Hb_149985_010 Hb_084646_010 Hb_084646_010 Hb_001016_120--Hb_084646_010 Hb_002481_080 Hb_002481_080 Hb_001016_120--Hb_002481_080 Hb_028227_070 Hb_028227_070 Hb_001016_120--Hb_028227_070 Hb_005054_110 Hb_005054_110 Hb_001016_120--Hb_005054_110 Hb_000504_070--Hb_028227_070 Hb_007416_120 Hb_007416_120 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_000175_540 Hb_000175_540 Hb_000504_070--Hb_000175_540 Hb_010775_040 Hb_010775_040 Hb_004781_010--Hb_010775_040 Hb_029243_030 Hb_029243_030 Hb_004781_010--Hb_029243_030 Hb_000078_120 Hb_000078_120 Hb_004781_010--Hb_000078_120 Hb_000917_230 Hb_000917_230 Hb_004781_010--Hb_000917_230 Hb_004781_010--Hb_023001_040 Hb_000853_150--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000853_150--Hb_001218_030 Hb_000853_150--Hb_005588_060 Hb_001828_150 Hb_001828_150 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89945 1.95173 2.06844 2.84233 0.771044 1.83568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02375 3.07032 2.39103 3.78588 1.95152

CAGE analysis