Hb_006452_110

Information

Type -
Description -
Location Contig6452: 68269-73163
Sequence    

Annotation

kegg
ID rcu:RCOM_0454060
description Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative (EC:1.10.2.2)
nr
ID XP_002532440.1
description Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
swissprot
ID P48504
description Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2
trembl
ID B9T2H1
description Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative OS=Ricinus communis GN=RCOM_0454060 PE=4 SV=1
Gene Ontology
ID GO:0005743
description cytochrome b-c1 complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52306: 65596-73141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_110 0.0 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
2 Hb_000733_080 0.1157746896 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
3 Hb_003894_080 0.1217536089 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
4 Hb_000130_100 0.1246863218 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
5 Hb_005000_330 0.1247801537 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012340_050 0.1273306038 - - PREDICTED: actin-related protein 5 [Jatropha curcas]
7 Hb_001163_040 0.1299223737 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
8 Hb_004784_020 0.136825856 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
9 Hb_080601_020 0.1371089078 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
10 Hb_000473_020 0.140218807 - - expressed protein, putative [Ricinus communis]
11 Hb_001208_040 0.1429741464 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
12 Hb_000107_300 0.1431196433 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
13 Hb_002960_130 0.1431784775 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
14 Hb_016604_030 0.1459776239 - - histone H4 [Zea mays]
15 Hb_000340_520 0.1469994393 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
16 Hb_000849_130 0.147435227 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
17 Hb_003605_160 0.1493437864 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
18 Hb_019762_020 0.1508587718 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
19 Hb_026314_020 0.1509127391 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
20 Hb_000023_290 0.1512440879 - - steroid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006452_110 Hb_006452_110 Hb_000733_080 Hb_000733_080 Hb_006452_110--Hb_000733_080 Hb_003894_080 Hb_003894_080 Hb_006452_110--Hb_003894_080 Hb_000130_100 Hb_000130_100 Hb_006452_110--Hb_000130_100 Hb_005000_330 Hb_005000_330 Hb_006452_110--Hb_005000_330 Hb_012340_050 Hb_012340_050 Hb_006452_110--Hb_012340_050 Hb_001163_040 Hb_001163_040 Hb_006452_110--Hb_001163_040 Hb_001252_210 Hb_001252_210 Hb_000733_080--Hb_001252_210 Hb_019762_020 Hb_019762_020 Hb_000733_080--Hb_019762_020 Hb_000023_290 Hb_000023_290 Hb_000733_080--Hb_000023_290 Hb_000733_080--Hb_003894_080 Hb_003929_270 Hb_003929_270 Hb_000733_080--Hb_003929_270 Hb_003894_080--Hb_001252_210 Hb_000292_060 Hb_000292_060 Hb_003894_080--Hb_000292_060 Hb_000322_140 Hb_000322_140 Hb_003894_080--Hb_000322_140 Hb_000028_350 Hb_000028_350 Hb_003894_080--Hb_000028_350 Hb_003605_160 Hb_003605_160 Hb_003894_080--Hb_003605_160 Hb_003018_050 Hb_003018_050 Hb_000130_100--Hb_003018_050 Hb_000975_180 Hb_000975_180 Hb_000130_100--Hb_000975_180 Hb_006452_040 Hb_006452_040 Hb_000130_100--Hb_006452_040 Hb_002324_010 Hb_002324_010 Hb_000130_100--Hb_002324_010 Hb_000107_300 Hb_000107_300 Hb_000130_100--Hb_000107_300 Hb_005045_070 Hb_005045_070 Hb_000130_100--Hb_005045_070 Hb_004176_070 Hb_004176_070 Hb_005000_330--Hb_004176_070 Hb_000359_150 Hb_000359_150 Hb_005000_330--Hb_000359_150 Hb_002686_110 Hb_002686_110 Hb_005000_330--Hb_002686_110 Hb_000167_080 Hb_000167_080 Hb_005000_330--Hb_000167_080 Hb_000473_020 Hb_000473_020 Hb_005000_330--Hb_000473_020 Hb_004784_020 Hb_004784_020 Hb_005000_330--Hb_004784_020 Hb_012340_050--Hb_000107_300 Hb_005144_010 Hb_005144_010 Hb_012340_050--Hb_005144_010 Hb_000826_100 Hb_000826_100 Hb_012340_050--Hb_000826_100 Hb_002314_010 Hb_002314_010 Hb_012340_050--Hb_002314_010 Hb_000365_250 Hb_000365_250 Hb_012340_050--Hb_000365_250 Hb_011512_050 Hb_011512_050 Hb_001163_040--Hb_011512_050 Hb_002078_260 Hb_002078_260 Hb_001163_040--Hb_002078_260 Hb_001220_010 Hb_001220_010 Hb_001163_040--Hb_001220_010 Hb_007894_230 Hb_007894_230 Hb_001163_040--Hb_007894_230 Hb_080601_020 Hb_080601_020 Hb_001163_040--Hb_080601_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.7224 1.92624 10.4503 44.6261 5.73205 16.0605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3196 31.2456 14.8401 7.80719 5.69723

CAGE analysis