Hb_006452_140

Information

Type -
Description -
Location Contig6452: 116933-123088
Sequence    

Annotation

kegg
ID rcu:RCOM_0471690
description Cycloartenol synthase, putative (EC:5.4.99.8)
nr
ID XP_012073072.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
swissprot
ID A8CDT3
description Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1
trembl
ID B9SMW6
description Terpene cyclase/mutase family member OS=Ricinus communis GN=RCOM_0471690 PE=3 SV=1
Gene Ontology
ID GO:0042299
description lupeol synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_140 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
2 Hb_006124_040 0.0758505385 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_000796_100 0.0817897333 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
4 Hb_002648_020 0.0824438201 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
5 Hb_001271_040 0.089284226 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
6 Hb_001403_100 0.0915026334 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
7 Hb_001104_260 0.0915208672 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
8 Hb_004829_050 0.0915334244 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
9 Hb_011639_130 0.0916082787 - - mads box protein, putative [Ricinus communis]
10 Hb_005204_030 0.0924983977 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
11 Hb_064855_010 0.0928160549 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_008078_040 0.0932206326 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
13 Hb_000756_040 0.0934952796 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_000764_060 0.0944259095 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
15 Hb_007676_070 0.0948008634 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
16 Hb_006353_010 0.0951970198 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
17 Hb_068447_010 0.0958394029 - - protein with unknown function [Ricinus communis]
18 Hb_006616_050 0.0996458213 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
19 Hb_000844_020 0.1003054106 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
20 Hb_011924_010 0.1003516471 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]

Gene co-expression network

sample Hb_006452_140 Hb_006452_140 Hb_006124_040 Hb_006124_040 Hb_006452_140--Hb_006124_040 Hb_000796_100 Hb_000796_100 Hb_006452_140--Hb_000796_100 Hb_002648_020 Hb_002648_020 Hb_006452_140--Hb_002648_020 Hb_001271_040 Hb_001271_040 Hb_006452_140--Hb_001271_040 Hb_001403_100 Hb_001403_100 Hb_006452_140--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_006452_140--Hb_001104_260 Hb_030312_060 Hb_030312_060 Hb_006124_040--Hb_030312_060 Hb_006124_040--Hb_002648_020 Hb_003683_090 Hb_003683_090 Hb_006124_040--Hb_003683_090 Hb_001403_070 Hb_001403_070 Hb_006124_040--Hb_001403_070 Hb_000699_200 Hb_000699_200 Hb_006124_040--Hb_000699_200 Hb_064855_010 Hb_064855_010 Hb_000796_100--Hb_064855_010 Hb_000844_020 Hb_000844_020 Hb_000796_100--Hb_000844_020 Hb_011924_030 Hb_011924_030 Hb_000796_100--Hb_011924_030 Hb_006616_050 Hb_006616_050 Hb_000796_100--Hb_006616_050 Hb_023827_010 Hb_023827_010 Hb_000796_100--Hb_023827_010 Hb_006353_010 Hb_006353_010 Hb_002648_020--Hb_006353_010 Hb_002648_020--Hb_001403_070 Hb_001268_070 Hb_001268_070 Hb_002648_020--Hb_001268_070 Hb_002648_020--Hb_003683_090 Hb_101778_020 Hb_101778_020 Hb_001271_040--Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_001271_040--Hb_006586_020 Hb_011924_010 Hb_011924_010 Hb_001271_040--Hb_011924_010 Hb_000123_320 Hb_000123_320 Hb_001271_040--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_001271_040--Hb_003430_010 Hb_068447_010 Hb_068447_010 Hb_001271_040--Hb_068447_010 Hb_001403_100--Hb_001104_260 Hb_004829_050 Hb_004829_050 Hb_001403_100--Hb_004829_050 Hb_011639_130 Hb_011639_130 Hb_001403_100--Hb_011639_130 Hb_005204_030 Hb_005204_030 Hb_001403_100--Hb_005204_030 Hb_008078_040 Hb_008078_040 Hb_001403_100--Hb_008078_040 Hb_000756_040 Hb_000756_040 Hb_001403_100--Hb_000756_040 Hb_001104_260--Hb_004829_050 Hb_001104_260--Hb_011639_130 Hb_001104_260--Hb_005204_030 Hb_001104_260--Hb_008078_040 Hb_001104_260--Hb_000756_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.16722 0.0817801 0.0177747 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.723154 0

CAGE analysis