Hb_006452_160

Information

Type -
Description -
Location Contig6452: 150680-158423
Sequence    

Annotation

kegg
ID rcu:RCOM_0010710
description structural constituent of ribosome, putative
nr
ID XP_002530443.1
description structural constituent of ribosome, putative [Ricinus communis]
swissprot
ID B7IFB5
description 30S ribosomal protein S15 OS=Thermosipho africanus (strain TCF52B) GN=rpsO PE=3 SV=1
trembl
ID B9SWS4
description Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_0010710 PE=3 SV=1
Gene Ontology
ID GO:0030529
description structural constituent of

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52313: 150813-158160 , PASA_asmbl_52315: 154688-154863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_160 0.0 - - structural constituent of ribosome, putative [Ricinus communis]
2 Hb_002739_130 0.0573524935 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
3 Hb_000563_330 0.0578565476 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_002045_150 0.071633372 - - histone acetyltransferase gcn5, putative [Ricinus communis]
5 Hb_005188_060 0.0745638634 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
6 Hb_000140_330 0.0753212623 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
7 Hb_016734_090 0.0765420423 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
8 Hb_002157_260 0.0775353577 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
9 Hb_080147_040 0.0813543665 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
10 Hb_007943_120 0.0825328836 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
11 Hb_032202_230 0.0841107788 - - peroxisomal biogenesis factor, putative [Ricinus communis]
12 Hb_002301_270 0.0862009241 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
13 Hb_003680_230 0.0906615332 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
14 Hb_007951_100 0.0916472879 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_005883_010 0.092617896 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001269_200 0.0929508272 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
17 Hb_000679_340 0.0938537331 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
18 Hb_011918_050 0.0947432376 - - -
19 Hb_004079_120 0.0951637041 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
20 Hb_011609_170 0.0954884957 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_160 Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_006452_160--Hb_002739_130 Hb_000563_330 Hb_000563_330 Hb_006452_160--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_006452_160--Hb_002045_150 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_006452_160--Hb_000140_330 Hb_016734_090 Hb_016734_090 Hb_006452_160--Hb_016734_090 Hb_002739_130--Hb_016734_090 Hb_002739_130--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_002739_130--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_002739_130--Hb_011918_050 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_039605_010 Hb_039605_010 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_000563_330--Hb_016734_090 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_140049_030 Hb_140049_030 Hb_002045_150--Hb_140049_030 Hb_050847_020 Hb_050847_020 Hb_002045_150--Hb_050847_020 Hb_000771_180 Hb_000771_180 Hb_002045_150--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_002045_150--Hb_000300_360 Hb_007943_120 Hb_007943_120 Hb_005188_060--Hb_007943_120 Hb_005883_010 Hb_005883_010 Hb_005188_060--Hb_005883_010 Hb_003680_230 Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_005188_060--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005188_060--Hb_007229_040 Hb_004635_050 Hb_004635_050 Hb_005188_060--Hb_004635_050 Hb_000140_330--Hb_005883_010 Hb_000140_330--Hb_007943_120 Hb_000406_240 Hb_000406_240 Hb_000140_330--Hb_000406_240 Hb_000368_020 Hb_000368_020 Hb_000140_330--Hb_000368_020 Hb_016734_090--Hb_011918_050 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_016734_090--Hb_000661_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.5132 30.5398 34.1355 11.188 37.6202 33.8452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2544 15.3567 8.50863 12.7041 12.9225

CAGE analysis