Hb_006452_170

Information

Type -
Description -
Location Contig6452: 160733-163347
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52316: 160734-163184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_170 0.0 - - -
2 Hb_007317_200 0.0848142375 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_004324_070 0.087955396 - - protein phosphatase 2C [Hevea brasiliensis]
4 Hb_050514_010 0.0903183964 - - hypothetical protein 29 [Hevea brasiliensis]
5 Hb_007389_010 0.097267475 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
6 Hb_000866_260 0.099069867 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
7 Hb_002235_250 0.0994517135 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
8 Hb_008165_060 0.1015693446 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
9 Hb_004724_080 0.1016644936 - - conserved hypothetical protein [Ricinus communis]
10 Hb_017358_030 0.1027652626 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
11 Hb_138585_090 0.1039095563 - - Long chain base2 isoform 2 [Theobroma cacao]
12 Hb_000329_320 0.1041437368 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
13 Hb_011519_010 0.1044488358 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
14 Hb_000917_060 0.1046555214 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
15 Hb_000260_030 0.1051027234 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
16 Hb_000008_470 0.1056119466 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
17 Hb_003683_160 0.1063641035 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
18 Hb_000614_160 0.1073888119 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
19 Hb_000866_010 0.1092304788 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004884_070 0.1093203399 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_170 Hb_006452_170 Hb_007317_200 Hb_007317_200 Hb_006452_170--Hb_007317_200 Hb_004324_070 Hb_004324_070 Hb_006452_170--Hb_004324_070 Hb_050514_010 Hb_050514_010 Hb_006452_170--Hb_050514_010 Hb_007389_010 Hb_007389_010 Hb_006452_170--Hb_007389_010 Hb_000866_260 Hb_000866_260 Hb_006452_170--Hb_000866_260 Hb_002235_250 Hb_002235_250 Hb_006452_170--Hb_002235_250 Hb_004724_080 Hb_004724_080 Hb_007317_200--Hb_004724_080 Hb_075449_010 Hb_075449_010 Hb_007317_200--Hb_075449_010 Hb_017358_030 Hb_017358_030 Hb_007317_200--Hb_017358_030 Hb_000352_270 Hb_000352_270 Hb_007317_200--Hb_000352_270 Hb_000614_160 Hb_000614_160 Hb_007317_200--Hb_000614_160 Hb_003683_160 Hb_003683_160 Hb_004324_070--Hb_003683_160 Hb_000008_470 Hb_000008_470 Hb_004324_070--Hb_000008_470 Hb_000347_540 Hb_000347_540 Hb_004324_070--Hb_000347_540 Hb_112798_030 Hb_112798_030 Hb_004324_070--Hb_112798_030 Hb_000069_110 Hb_000069_110 Hb_004324_070--Hb_000069_110 Hb_000260_030 Hb_000260_030 Hb_050514_010--Hb_000260_030 Hb_000827_050 Hb_000827_050 Hb_050514_010--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_050514_010--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_050514_010--Hb_003728_060 Hb_004109_170 Hb_004109_170 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_007389_010--Hb_000866_260 Hb_007389_010--Hb_000614_160 Hb_007389_010--Hb_017358_030 Hb_000866_010 Hb_000866_010 Hb_007389_010--Hb_000866_010 Hb_007389_010--Hb_002235_250 Hb_032264_070 Hb_032264_070 Hb_007389_010--Hb_032264_070 Hb_000917_060 Hb_000917_060 Hb_000866_260--Hb_000917_060 Hb_000866_260--Hb_017358_030 Hb_002013_020 Hb_002013_020 Hb_000866_260--Hb_002013_020 Hb_000329_320 Hb_000329_320 Hb_000866_260--Hb_000329_320 Hb_000753_240 Hb_000753_240 Hb_000866_260--Hb_000753_240 Hb_005496_140 Hb_005496_140 Hb_002235_250--Hb_005496_140 Hb_000331_260 Hb_000331_260 Hb_002235_250--Hb_000331_260 Hb_001971_010 Hb_001971_010 Hb_002235_250--Hb_001971_010 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_002235_250--Hb_000866_010 Hb_000375_350 Hb_000375_350 Hb_002235_250--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0886 5.33628 11.9792 7.57674 8.47021 12.0516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.76573 13.8134 20.0877 4.19751 10.5714

CAGE analysis