Hb_006452_190

Information

Type -
Description -
Location Contig6452: 177253-183707
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18630g
description POPTRDRAFT_1067569; 3-isopropylmalate dehydrogenase 2 family protein
nr
ID XP_012073090.1
description PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID P29102
description 3-isopropylmalate dehydrogenase, chloroplastic OS=Brassica napus PE=2 SV=1
trembl
ID A0A067KL83
description 3-isopropylmalate dehydrogenase OS=Jatropha curcas GN=JCGZ_06072 PE=3 SV=1
Gene Ontology
ID GO:0009536
description 3-isopropylmalate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_190 0.0 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
2 Hb_000183_070 0.1013688415 - - -
3 Hb_005714_040 0.1034642519 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001437_300 0.114322015 - - -
5 Hb_005271_070 0.1150792341 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
6 Hb_005015_010 0.1178129914 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
7 Hb_011537_040 0.1242853912 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
8 Hb_004374_010 0.1270058048 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
9 Hb_002851_060 0.1294037062 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
10 Hb_004046_040 0.1298901782 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
11 Hb_001386_130 0.1333178454 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
12 Hb_000188_190 0.1333801565 - - -
13 Hb_044662_040 0.1340786898 - - -
14 Hb_006501_150 0.1358074464 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005545_030 0.1387457343 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
16 Hb_000977_140 0.1402433282 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
17 Hb_001514_020 0.1406681594 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
18 Hb_004813_010 0.1408914668 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_010883_210 0.1426545777 - - PREDICTED: selenoprotein K [Jatropha curcas]
20 Hb_001158_040 0.1448394569 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_190 Hb_006452_190 Hb_000183_070 Hb_000183_070 Hb_006452_190--Hb_000183_070 Hb_005714_040 Hb_005714_040 Hb_006452_190--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_006452_190--Hb_001437_300 Hb_005271_070 Hb_005271_070 Hb_006452_190--Hb_005271_070 Hb_005015_010 Hb_005015_010 Hb_006452_190--Hb_005015_010 Hb_011537_040 Hb_011537_040 Hb_006452_190--Hb_011537_040 Hb_000183_070--Hb_005714_040 Hb_000183_070--Hb_001437_300 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140 Hb_005714_040--Hb_005389_140 Hb_005714_040--Hb_005015_010 Hb_000590_090 Hb_000590_090 Hb_005714_040--Hb_000590_090 Hb_000188_190 Hb_000188_190 Hb_005714_040--Hb_000188_190 Hb_004374_010 Hb_004374_010 Hb_001437_300--Hb_004374_010 Hb_017098_030 Hb_017098_030 Hb_001437_300--Hb_017098_030 Hb_001437_300--Hb_006501_150 Hb_007992_030 Hb_007992_030 Hb_001437_300--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_001437_300--Hb_001514_020 Hb_005271_070--Hb_011537_040 Hb_000258_410 Hb_000258_410 Hb_005271_070--Hb_000258_410 Hb_164010_020 Hb_164010_020 Hb_005271_070--Hb_164010_020 Hb_005741_020 Hb_005741_020 Hb_005271_070--Hb_005741_020 Hb_000500_290 Hb_000500_290 Hb_005271_070--Hb_000500_290 Hb_005271_070--Hb_004374_010 Hb_005015_010--Hb_000188_190 Hb_004096_170 Hb_004096_170 Hb_005015_010--Hb_004096_170 Hb_009801_010 Hb_009801_010 Hb_005015_010--Hb_009801_010 Hb_005015_010--Hb_004374_010 Hb_011537_040--Hb_000258_410 Hb_001956_120 Hb_001956_120 Hb_011537_040--Hb_001956_120 Hb_011537_040--Hb_004374_010 Hb_000282_150 Hb_000282_150 Hb_011537_040--Hb_000282_150 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3942 3.30104 1.99936 0.709935 18.0444 9.09172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9568 9.08388 2.0689 2.15843 1.68423

CAGE analysis