Hb_006452_220

Information

Type -
Description -
Location Contig6452: 216674-225736
Sequence    

Annotation

kegg
ID rcu:RCOM_0011050
description hypothetical protein
nr
ID XP_012073425.1
description PREDICTED: uncharacterized protein LOC105635043 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06076 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52322: 219959-220069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_220 0.0 - - PREDICTED: uncharacterized protein LOC105635043 [Jatropha curcas]
2 Hb_015807_140 0.2232595204 - - small heat-shock protein, putative [Ricinus communis]
3 Hb_009879_010 0.2329954788 - - phosphate transporter 1 [Hevea brasiliensis]
4 Hb_011381_100 0.2365790116 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
5 Hb_005784_110 0.2440823292 - - PREDICTED: dolichol-phosphate mannosyltransferase-like isoform X1 [Citrus sinensis]
6 Hb_001488_070 0.2447196511 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000019_070 0.2470507418 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
8 Hb_003893_040 0.2475953484 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
9 Hb_001205_070 0.2477148394 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
10 Hb_001514_230 0.247996847 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
11 Hb_002301_060 0.2498909438 - - hypothetical protein JCGZ_21483 [Jatropha curcas]
12 Hb_003992_080 0.2540422147 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
13 Hb_003581_070 0.2542899417 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
14 Hb_002875_080 0.2545960971 - - protein with unknown function [Ricinus communis]
15 Hb_000640_080 0.2554490193 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
16 Hb_001504_100 0.2555753815 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
17 Hb_005147_100 0.2570299711 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000920_240 0.2581536228 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
19 Hb_029866_040 0.2582038505 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
20 Hb_000494_100 0.2585878342 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]

Gene co-expression network

sample Hb_006452_220 Hb_006452_220 Hb_015807_140 Hb_015807_140 Hb_006452_220--Hb_015807_140 Hb_009879_010 Hb_009879_010 Hb_006452_220--Hb_009879_010 Hb_011381_100 Hb_011381_100 Hb_006452_220--Hb_011381_100 Hb_005784_110 Hb_005784_110 Hb_006452_220--Hb_005784_110 Hb_001488_070 Hb_001488_070 Hb_006452_220--Hb_001488_070 Hb_000019_070 Hb_000019_070 Hb_006452_220--Hb_000019_070 Hb_002506_060 Hb_002506_060 Hb_015807_140--Hb_002506_060 Hb_009787_040 Hb_009787_040 Hb_015807_140--Hb_009787_040 Hb_002053_060 Hb_002053_060 Hb_015807_140--Hb_002053_060 Hb_000099_060 Hb_000099_060 Hb_015807_140--Hb_000099_060 Hb_122239_010 Hb_122239_010 Hb_015807_140--Hb_122239_010 Hb_138585_060 Hb_138585_060 Hb_015807_140--Hb_138585_060 Hb_000920_240 Hb_000920_240 Hb_009879_010--Hb_000920_240 Hb_000001_050 Hb_000001_050 Hb_009879_010--Hb_000001_050 Hb_029866_040 Hb_029866_040 Hb_009879_010--Hb_029866_040 Hb_000124_020 Hb_000124_020 Hb_009879_010--Hb_000124_020 Hb_000179_050 Hb_000179_050 Hb_009879_010--Hb_000179_050 Hb_073973_140 Hb_073973_140 Hb_009879_010--Hb_073973_140 Hb_011381_100--Hb_029866_040 Hb_000377_060 Hb_000377_060 Hb_011381_100--Hb_000377_060 Hb_003055_120 Hb_003055_120 Hb_011381_100--Hb_003055_120 Hb_005431_010 Hb_005431_010 Hb_011381_100--Hb_005431_010 Hb_000510_320 Hb_000510_320 Hb_011381_100--Hb_000510_320 Hb_000009_160 Hb_000009_160 Hb_011381_100--Hb_000009_160 Hb_009051_030 Hb_009051_030 Hb_005784_110--Hb_009051_030 Hb_002518_080 Hb_002518_080 Hb_005784_110--Hb_002518_080 Hb_000505_040 Hb_000505_040 Hb_005784_110--Hb_000505_040 Hb_004738_100 Hb_004738_100 Hb_005784_110--Hb_004738_100 Hb_003605_090 Hb_003605_090 Hb_005784_110--Hb_003605_090 Hb_003108_020 Hb_003108_020 Hb_005784_110--Hb_003108_020 Hb_002813_040 Hb_002813_040 Hb_001488_070--Hb_002813_040 Hb_000512_060 Hb_000512_060 Hb_001488_070--Hb_000512_060 Hb_000175_460 Hb_000175_460 Hb_001488_070--Hb_000175_460 Hb_031527_040 Hb_031527_040 Hb_001488_070--Hb_031527_040 Hb_005686_060 Hb_005686_060 Hb_001488_070--Hb_005686_060 Hb_001488_070--Hb_000510_320 Hb_003207_170 Hb_003207_170 Hb_000019_070--Hb_003207_170 Hb_114310_080 Hb_114310_080 Hb_000019_070--Hb_114310_080 Hb_000483_390 Hb_000483_390 Hb_000019_070--Hb_000483_390 Hb_011377_050 Hb_011377_050 Hb_000019_070--Hb_011377_050 Hb_000392_380 Hb_000392_380 Hb_000019_070--Hb_000392_380 Hb_003671_020 Hb_003671_020 Hb_000019_070--Hb_003671_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0832414 0.0259874 0.0134332 0.0669771 0.0230264 0.0207072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0132541 0.0938714 0.079917 0.0165396 0

CAGE analysis