Hb_006455_020

Information

Type -
Description -
Location Contig6455: 49053-53691
Sequence    

Annotation

kegg
ID rcu:RCOM_0823630
description Ent-kaurene synthase B, chloroplast precursor, putative (EC:4.2.3.19)
nr
ID XP_002525841.1
description Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q39548
description Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1 SV=1
trembl
ID B9SIM2
description Ent-kaurene synthase B, chloroplast, putative OS=Ricinus communis GN=RCOM_0823630 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-kaurene synthase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006455_020 0.0 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
2 Hb_020831_070 0.0839048327 - - hypothetical protein VITISV_027174 [Vitis vinifera]
3 Hb_000476_030 0.1070308828 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
4 Hb_005678_030 0.1103254808 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
5 Hb_000644_020 0.1201945087 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_000522_030 0.1206543 - - hypothetical protein VITISV_006017 [Vitis vinifera]
7 Hb_007533_050 0.120940372 - - -
8 Hb_000567_270 0.1211141981 - - hypothetical protein L484_017162 [Morus notabilis]
9 Hb_043792_030 0.1228639145 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
10 Hb_003311_020 0.1250122015 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000135_080 0.1275184369 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
12 Hb_001856_280 0.130076893 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
13 Hb_019654_170 0.1317457438 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
14 Hb_003462_170 0.1326126644 - - unnamed protein product [Vitis vinifera]
15 Hb_032016_010 0.1340895042 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
16 Hb_170878_020 0.1388956085 - - -
17 Hb_001699_020 0.141248746 - - hypothetical protein L484_026849 [Morus notabilis]
18 Hb_077151_010 0.1444256899 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_049285_010 0.1457391586 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
20 Hb_003073_030 0.1457523021 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006455_020 Hb_006455_020 Hb_020831_070 Hb_020831_070 Hb_006455_020--Hb_020831_070 Hb_000476_030 Hb_000476_030 Hb_006455_020--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_006455_020--Hb_005678_030 Hb_000644_020 Hb_000644_020 Hb_006455_020--Hb_000644_020 Hb_000522_030 Hb_000522_030 Hb_006455_020--Hb_000522_030 Hb_007533_050 Hb_007533_050 Hb_006455_020--Hb_007533_050 Hb_043792_030 Hb_043792_030 Hb_020831_070--Hb_043792_030 Hb_001856_280 Hb_001856_280 Hb_020831_070--Hb_001856_280 Hb_019654_170 Hb_019654_170 Hb_020831_070--Hb_019654_170 Hb_035651_010 Hb_035651_010 Hb_020831_070--Hb_035651_010 Hb_003311_020 Hb_003311_020 Hb_020831_070--Hb_003311_020 Hb_000135_080 Hb_000135_080 Hb_000476_030--Hb_000135_080 Hb_000476_030--Hb_005678_030 Hb_000476_030--Hb_000522_030 Hb_005029_030 Hb_005029_030 Hb_000476_030--Hb_005029_030 Hb_000858_050 Hb_000858_050 Hb_000476_030--Hb_000858_050 Hb_005678_030--Hb_000135_080 Hb_077151_010 Hb_077151_010 Hb_005678_030--Hb_077151_010 Hb_168319_040 Hb_168319_040 Hb_005678_030--Hb_168319_040 Hb_000441_080 Hb_000441_080 Hb_005678_030--Hb_000441_080 Hb_170878_020 Hb_170878_020 Hb_000644_020--Hb_170878_020 Hb_032016_010 Hb_032016_010 Hb_000644_020--Hb_032016_010 Hb_000567_270 Hb_000567_270 Hb_000644_020--Hb_000567_270 Hb_040245_010 Hb_040245_010 Hb_000644_020--Hb_040245_010 Hb_003073_030 Hb_003073_030 Hb_000644_020--Hb_003073_030 Hb_011931_090 Hb_011931_090 Hb_000522_030--Hb_011931_090 Hb_150516_010 Hb_150516_010 Hb_000522_030--Hb_150516_010 Hb_005623_060 Hb_005623_060 Hb_000522_030--Hb_005623_060 Hb_000522_030--Hb_000135_080 Hb_000405_010 Hb_000405_010 Hb_000522_030--Hb_000405_010 Hb_007533_050--Hb_032016_010 Hb_000432_020 Hb_000432_020 Hb_007533_050--Hb_000432_020 Hb_007533_050--Hb_003311_020 Hb_007533_050--Hb_000567_270 Hb_049285_010 Hb_049285_010 Hb_007533_050--Hb_049285_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0194548 0.0478913 0.0275782 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.111639 0.537659

CAGE analysis