Hb_006455_090

Information

Type -
Description -
Location Contig6455: 147699-149740
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa008146mg
description hypothetical protein
nr
ID XP_012088608.1
description PREDICTED: transcription factor GTE1-like [Jatropha curcas]
swissprot
ID Q84XV2
description Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1
trembl
ID A0A067JIS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52328: 131055-165306 , PASA_asmbl_52329: 131055-165306 , PASA_asmbl_52330: 132755-149352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006455_090 0.0 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
2 Hb_006455_080 0.0654894189 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
3 Hb_006455_110 0.0787941186 - - bromodomain-containing protein, putative [Ricinus communis]
4 Hb_003711_040 0.082885183 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
5 Hb_012286_050 0.1024418987 - - PREDICTED: syntaxin-61 [Jatropha curcas]
6 Hb_000307_200 0.1052772854 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
7 Hb_020902_010 0.1127329072 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
8 Hb_063047_010 0.1132287623 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
9 Hb_000878_130 0.1136761961 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012807_080 0.1213595824 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
11 Hb_000453_080 0.1222014017 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000453_270 0.1228455696 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
13 Hb_001609_010 0.1232168272 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
14 Hb_002046_040 0.1242177097 - - PREDICTED: topless-related protein 4 [Malus domestica]
15 Hb_000295_100 0.1244561151 - - -
16 Hb_000248_050 0.1248159635 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
17 Hb_000696_350 0.126971822 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
18 Hb_001040_160 0.1273689481 - - glutaredoxin, grx, putative [Ricinus communis]
19 Hb_000152_740 0.1274108867 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
20 Hb_008528_010 0.1282331665 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]

Gene co-expression network

sample Hb_006455_090 Hb_006455_090 Hb_006455_080 Hb_006455_080 Hb_006455_090--Hb_006455_080 Hb_006455_110 Hb_006455_110 Hb_006455_090--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_006455_090--Hb_003711_040 Hb_012286_050 Hb_012286_050 Hb_006455_090--Hb_012286_050 Hb_000307_200 Hb_000307_200 Hb_006455_090--Hb_000307_200 Hb_020902_010 Hb_020902_010 Hb_006455_090--Hb_020902_010 Hb_006455_080--Hb_006455_110 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_006455_080--Hb_003711_040 Hb_000295_100 Hb_000295_100 Hb_006455_080--Hb_000295_100 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_005965_010 Hb_005965_010 Hb_006455_110--Hb_005965_010 Hb_006455_110--Hb_000295_100 Hb_012807_080 Hb_012807_080 Hb_006455_110--Hb_012807_080 Hb_006455_110--Hb_012286_050 Hb_083043_010 Hb_083043_010 Hb_003711_040--Hb_083043_010 Hb_002811_120 Hb_002811_120 Hb_003711_040--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_003711_040--Hb_004881_050 Hb_001609_010 Hb_001609_010 Hb_003711_040--Hb_001609_010 Hb_005000_270 Hb_005000_270 Hb_003711_040--Hb_005000_270 Hb_012286_050--Hb_000307_200 Hb_002023_020 Hb_002023_020 Hb_012286_050--Hb_002023_020 Hb_000364_150 Hb_000364_150 Hb_012286_050--Hb_000364_150 Hb_012286_050--Hb_020902_010 Hb_039253_010 Hb_039253_010 Hb_012286_050--Hb_039253_010 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000077_050 Hb_000077_050 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070 Hb_036034_010 Hb_036034_010 Hb_020902_010--Hb_036034_010 Hb_000878_130 Hb_000878_130 Hb_020902_010--Hb_000878_130 Hb_020902_010--Hb_000307_200 Hb_014568_030 Hb_014568_030 Hb_020902_010--Hb_014568_030 Hb_004735_010 Hb_004735_010 Hb_020902_010--Hb_004735_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.9861 30.339 6.88939 25.9561 81.0091 228.341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.1527 31.5114 54.9842 27.0643 22.5011

CAGE analysis