Hb_006455_110

Information

Type -
Description -
Location Contig6455: 164852-165388
Sequence    

Annotation

kegg
ID rcu:RCOM_0096980
description bromodomain-containing protein, putative
nr
ID XP_002532712.1
description bromodomain-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T393
description Bromodomain-containing protein, putative OS=Ricinus communis GN=RCOM_0096980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52327: 163635-163978 , PASA_asmbl_52328: 131055-165306 , PASA_asmbl_52329: 131055-165306 , PASA_asmbl_52332: 165321-166021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006455_110 0.0 - - bromodomain-containing protein, putative [Ricinus communis]
2 Hb_005965_010 0.0730914773 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
3 Hb_006455_090 0.0787941186 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
4 Hb_006455_080 0.0958485691 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
5 Hb_000295_100 0.1071750306 - - -
6 Hb_012807_080 0.1147856955 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
7 Hb_012286_050 0.1154182398 - - PREDICTED: syntaxin-61 [Jatropha curcas]
8 Hb_003711_040 0.1185841333 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
9 Hb_000696_350 0.1215177615 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
10 Hb_073339_010 0.1215218992 - - hypothetical protein 30 [Hevea brasiliensis]
11 Hb_020902_010 0.1221853301 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
12 Hb_000307_200 0.1253383167 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
13 Hb_000878_130 0.1259377659 - - conserved hypothetical protein [Ricinus communis]
14 Hb_171788_010 0.129336676 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
15 Hb_033312_140 0.1324403005 - - RNA and export factor-binding family protein [Populus trichocarpa]
16 Hb_002023_020 0.135313074 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
17 Hb_010298_010 0.1376416363 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
18 Hb_000200_040 0.1411101476 - - -
19 Hb_003656_140 0.1456783091 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
20 Hb_083043_010 0.1501641207 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_006455_110 Hb_006455_110 Hb_005965_010 Hb_005965_010 Hb_006455_110--Hb_005965_010 Hb_006455_090 Hb_006455_090 Hb_006455_110--Hb_006455_090 Hb_006455_080 Hb_006455_080 Hb_006455_110--Hb_006455_080 Hb_000295_100 Hb_000295_100 Hb_006455_110--Hb_000295_100 Hb_012807_080 Hb_012807_080 Hb_006455_110--Hb_012807_080 Hb_012286_050 Hb_012286_050 Hb_006455_110--Hb_012286_050 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_106005_010 Hb_106005_010 Hb_005965_010--Hb_106005_010 Hb_005965_010--Hb_012807_080 Hb_005965_010--Hb_006455_080 Hb_005965_010--Hb_006455_090 Hb_006455_090--Hb_006455_080 Hb_003711_040 Hb_003711_040 Hb_006455_090--Hb_003711_040 Hb_006455_090--Hb_012286_050 Hb_000307_200 Hb_000307_200 Hb_006455_090--Hb_000307_200 Hb_020902_010 Hb_020902_010 Hb_006455_090--Hb_020902_010 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_006455_080--Hb_003711_040 Hb_006455_080--Hb_000295_100 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_000295_100--Hb_006455_090 Hb_002960_050 Hb_002960_050 Hb_000295_100--Hb_002960_050 Hb_000295_100--Hb_012807_080 Hb_000295_100--Hb_005965_010 Hb_001477_010 Hb_001477_010 Hb_012807_080--Hb_001477_010 Hb_012807_080--Hb_006455_090 Hb_002046_040 Hb_002046_040 Hb_012807_080--Hb_002046_040 Hb_003299_090 Hb_003299_090 Hb_012807_080--Hb_003299_090 Hb_012807_080--Hb_003711_040 Hb_012286_050--Hb_000307_200 Hb_002023_020 Hb_002023_020 Hb_012286_050--Hb_002023_020 Hb_000364_150 Hb_000364_150 Hb_012286_050--Hb_000364_150 Hb_012286_050--Hb_020902_010 Hb_039253_010 Hb_039253_010 Hb_012286_050--Hb_039253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.2531 31.1223 11.4319 40.5088 70.6411 292.758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.8721 50.0771 55.1708 29.5996 17.4687

CAGE analysis