Hb_006455_120

Information

Type -
Description -
Location Contig6455: 169085-171563
Sequence    

Annotation

kegg
ID rcu:RCOM_0096960
description n6-DNA-methyltransferase, putative
nr
ID XP_002532710.1
description n6-DNA-methyltransferase, putative [Ricinus communis]
swissprot
ID Q9Y5N5
description HemK methyltransferase family member 2 OS=Homo sapiens GN=N6AMT1 PE=1 SV=3
trembl
ID B9T391
description N6-DNA-methyltransferase, putative OS=Ricinus communis GN=RCOM_0096960 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hemk methyltransferase family member 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52334: 169543-171520
cDNA
(Sanger)
(ID:Location)		 032_F20.ab1: 170217-171520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006455_120 0.0 - - n6-DNA-methyltransferase, putative [Ricinus communis]
2 Hb_006634_070 0.0491280971 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
3 Hb_011037_030 0.0501745083 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
4 Hb_000300_500 0.0547348748 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
5 Hb_000603_150 0.058516659 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
6 Hb_000580_180 0.0589235291 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000156_010 0.0592225056 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
8 Hb_023344_120 0.0613133059 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
9 Hb_003750_050 0.0625918443 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
10 Hb_005144_160 0.0632929659 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
11 Hb_011995_010 0.0638794291 - - dc50, putative [Ricinus communis]
12 Hb_005291_050 0.0647996296 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
13 Hb_001633_130 0.067480587 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
14 Hb_001357_350 0.0675519906 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010381_090 0.0675569317 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
16 Hb_001159_130 0.068291172 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
17 Hb_000260_350 0.0694265484 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001142_030 0.0698316644 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
19 Hb_002754_010 0.0702836838 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
20 Hb_000637_110 0.0710120489 - - hypothetical protein B456_013G081300 [Gossypium raimondii]

Gene co-expression network

sample Hb_006455_120 Hb_006455_120 Hb_006634_070 Hb_006634_070 Hb_006455_120--Hb_006634_070 Hb_011037_030 Hb_011037_030 Hb_006455_120--Hb_011037_030 Hb_000300_500 Hb_000300_500 Hb_006455_120--Hb_000300_500 Hb_000603_150 Hb_000603_150 Hb_006455_120--Hb_000603_150 Hb_000580_180 Hb_000580_180 Hb_006455_120--Hb_000580_180 Hb_000156_010 Hb_000156_010 Hb_006455_120--Hb_000156_010 Hb_023344_120 Hb_023344_120 Hb_006634_070--Hb_023344_120 Hb_006634_070--Hb_011037_030 Hb_001409_020 Hb_001409_020 Hb_006634_070--Hb_001409_020 Hb_006634_070--Hb_000156_010 Hb_005144_160 Hb_005144_160 Hb_006634_070--Hb_005144_160 Hb_011037_030--Hb_000156_010 Hb_054865_150 Hb_054865_150 Hb_011037_030--Hb_054865_150 Hb_000345_380 Hb_000345_380 Hb_011037_030--Hb_000345_380 Hb_105328_020 Hb_105328_020 Hb_011037_030--Hb_105328_020 Hb_003750_050 Hb_003750_050 Hb_011037_030--Hb_003750_050 Hb_000720_040 Hb_000720_040 Hb_000300_500--Hb_000720_040 Hb_000637_110 Hb_000637_110 Hb_000300_500--Hb_000637_110 Hb_002754_010 Hb_002754_010 Hb_000300_500--Hb_002754_010 Hb_001159_130 Hb_001159_130 Hb_000300_500--Hb_001159_130 Hb_000300_500--Hb_000603_150 Hb_000603_150--Hb_001159_130 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000120_670 Hb_000120_670 Hb_000603_150--Hb_000120_670 Hb_000603_150--Hb_000580_180 Hb_003549_150 Hb_003549_150 Hb_000603_150--Hb_003549_150 Hb_000580_180--Hb_005144_160 Hb_011344_210 Hb_011344_210 Hb_000580_180--Hb_011344_210 Hb_001142_030 Hb_001142_030 Hb_000580_180--Hb_001142_030 Hb_000580_180--Hb_000120_670 Hb_002863_050 Hb_002863_050 Hb_000580_180--Hb_002863_050 Hb_007691_030 Hb_007691_030 Hb_000580_180--Hb_007691_030 Hb_000156_010--Hb_003750_050 Hb_000156_010--Hb_054865_150 Hb_012498_010 Hb_012498_010 Hb_000156_010--Hb_012498_010 Hb_000156_010--Hb_105328_020 Hb_005291_050 Hb_005291_050 Hb_000156_010--Hb_005291_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.97595 6.07812 7.41527 9.58882 7.18377 9.447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.74262 8.15401 9.68032 6.50508 6.1675

CAGE analysis