Hb_006469_060

Information

Type -
Description -
Location Contig6469: 81570-91730
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16470g
description POPTRDRAFT_559152; hypothetical protein
nr
ID XP_002306595.2
description hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H771
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16470g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52345: 81596-84040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006469_060 0.0 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
2 Hb_000580_160 0.1108076702 - - Nitrate transporter 1.5 [Morus notabilis]
3 Hb_001252_140 0.1142314278 - - catalytic, putative [Ricinus communis]
4 Hb_007747_130 0.1153903374 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
5 Hb_005615_070 0.1190033238 - - Rab7 [Hevea brasiliensis]
6 Hb_001621_180 0.1247185438 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
7 Hb_012779_110 0.1258042886 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
8 Hb_005276_100 0.1297920556 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
9 Hb_000025_290 0.1342422218 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
10 Hb_000052_010 0.1400006395 - - hypothetical protein M569_08416, partial [Genlisea aurea]
11 Hb_004055_060 0.1462510667 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
12 Hb_000143_050 0.1475850103 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
13 Hb_003023_050 0.148025404 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
14 Hb_002235_220 0.1482499559 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
15 Hb_000526_020 0.149341125 - - thioredoxin-like family protein [Hevea brasiliensis]
16 Hb_000184_180 0.1506866886 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
17 Hb_000085_200 0.1565340259 - - ATP synthase subunit H protein [Hevea brasiliensis]
18 Hb_000061_160 0.1566408919 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
19 Hb_150299_030 0.1574882576 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001104_120 0.1626844271 - - -

Gene co-expression network

sample Hb_006469_060 Hb_006469_060 Hb_000580_160 Hb_000580_160 Hb_006469_060--Hb_000580_160 Hb_001252_140 Hb_001252_140 Hb_006469_060--Hb_001252_140 Hb_007747_130 Hb_007747_130 Hb_006469_060--Hb_007747_130 Hb_005615_070 Hb_005615_070 Hb_006469_060--Hb_005615_070 Hb_001621_180 Hb_001621_180 Hb_006469_060--Hb_001621_180 Hb_012779_110 Hb_012779_110 Hb_006469_060--Hb_012779_110 Hb_005276_100 Hb_005276_100 Hb_000580_160--Hb_005276_100 Hb_003023_050 Hb_003023_050 Hb_000580_160--Hb_003023_050 Hb_000580_160--Hb_012779_110 Hb_004055_060 Hb_004055_060 Hb_000580_160--Hb_004055_060 Hb_002235_220 Hb_002235_220 Hb_000580_160--Hb_002235_220 Hb_001252_140--Hb_001621_180 Hb_004410_010 Hb_004410_010 Hb_001252_140--Hb_004410_010 Hb_001252_140--Hb_007747_130 Hb_001104_120 Hb_001104_120 Hb_001252_140--Hb_001104_120 Hb_034585_040 Hb_034585_040 Hb_001252_140--Hb_034585_040 Hb_007747_130--Hb_004410_010 Hb_000184_180 Hb_000184_180 Hb_007747_130--Hb_000184_180 Hb_115919_020 Hb_115919_020 Hb_007747_130--Hb_115919_020 Hb_007747_130--Hb_001621_180 Hb_005615_070--Hb_001621_180 Hb_000143_050 Hb_000143_050 Hb_005615_070--Hb_000143_050 Hb_004297_040 Hb_004297_040 Hb_005615_070--Hb_004297_040 Hb_000032_260 Hb_000032_260 Hb_005615_070--Hb_000032_260 Hb_002291_030 Hb_002291_030 Hb_005615_070--Hb_002291_030 Hb_000085_300 Hb_000085_300 Hb_005615_070--Hb_000085_300 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_000563_590 Hb_000563_590 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_001621_180--Hb_001104_120 Hb_002221_080 Hb_002221_080 Hb_012779_110--Hb_002221_080 Hb_000025_290 Hb_000025_290 Hb_012779_110--Hb_000025_290 Hb_012779_110--Hb_003023_050 Hb_012779_110--Hb_005276_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.0692 0.0184045 0.0530106 0.70951 2.50644 2.60078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68474 9.815 2.71157 0.317052 0.0382505

CAGE analysis