Hb_006469_080

Information

Type -
Description -
Location Contig6469: 113798-116304
Sequence    

Annotation

kegg
ID rcu:RCOM_1033390
description hypothetical protein
nr
ID XP_002513864.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GWJ6
description Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1
trembl
ID B9RJE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52350: 113715-116147 , PASA_asmbl_52351: 114202-114485 , PASA_asmbl_52352: 115270-115572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006469_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000345_310 0.0786338254 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
3 Hb_094836_010 0.0854787819 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
4 Hb_002620_020 0.0862881156 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
5 Hb_185255_010 0.0898153739 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
6 Hb_000116_260 0.0934834527 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
7 Hb_005144_050 0.0949948037 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
8 Hb_006478_020 0.0961299586 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
9 Hb_004078_040 0.0987675143 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
10 Hb_001489_110 0.0988758758 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
11 Hb_025098_010 0.1002394717 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000329_210 0.101159837 - - Golgi snare 12 isoform 1 [Theobroma cacao]
13 Hb_008566_030 0.1015352477 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
14 Hb_000928_070 0.101862342 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
15 Hb_000856_010 0.1036849445 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
16 Hb_002677_020 0.1046418048 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
17 Hb_003025_100 0.1057390812 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
18 Hb_000436_130 0.1058251026 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
19 Hb_000066_080 0.1058455627 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_000733_180 0.1064707798 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]

Gene co-expression network

sample Hb_006469_080 Hb_006469_080 Hb_000345_310 Hb_000345_310 Hb_006469_080--Hb_000345_310 Hb_094836_010 Hb_094836_010 Hb_006469_080--Hb_094836_010 Hb_002620_020 Hb_002620_020 Hb_006469_080--Hb_002620_020 Hb_185255_010 Hb_185255_010 Hb_006469_080--Hb_185255_010 Hb_000116_260 Hb_000116_260 Hb_006469_080--Hb_000116_260 Hb_005144_050 Hb_005144_050 Hb_006469_080--Hb_005144_050 Hb_000375_350 Hb_000375_350 Hb_000345_310--Hb_000375_350 Hb_013575_010 Hb_013575_010 Hb_000345_310--Hb_013575_010 Hb_000260_350 Hb_000260_350 Hb_000345_310--Hb_000260_350 Hb_000599_250 Hb_000599_250 Hb_000345_310--Hb_000599_250 Hb_000925_130 Hb_000925_130 Hb_000345_310--Hb_000925_130 Hb_001300_150 Hb_001300_150 Hb_000345_310--Hb_001300_150 Hb_094836_010--Hb_002620_020 Hb_001936_010 Hb_001936_010 Hb_094836_010--Hb_001936_010 Hb_004078_040 Hb_004078_040 Hb_094836_010--Hb_004078_040 Hb_000614_250 Hb_000614_250 Hb_094836_010--Hb_000614_250 Hb_001377_490 Hb_001377_490 Hb_094836_010--Hb_001377_490 Hb_004837_160 Hb_004837_160 Hb_094836_010--Hb_004837_160 Hb_000066_080 Hb_000066_080 Hb_002620_020--Hb_000066_080 Hb_000003_250 Hb_000003_250 Hb_002620_020--Hb_000003_250 Hb_002450_020 Hb_002450_020 Hb_002620_020--Hb_002450_020 Hb_002620_020--Hb_001377_490 Hb_002620_020--Hb_000614_250 Hb_025098_010 Hb_025098_010 Hb_185255_010--Hb_025098_010 Hb_006683_070 Hb_006683_070 Hb_185255_010--Hb_006683_070 Hb_185255_010--Hb_005144_050 Hb_001269_190 Hb_001269_190 Hb_185255_010--Hb_001269_190 Hb_001489_110 Hb_001489_110 Hb_185255_010--Hb_001489_110 Hb_001307_030 Hb_001307_030 Hb_185255_010--Hb_001307_030 Hb_001352_020 Hb_001352_020 Hb_000116_260--Hb_001352_020 Hb_000497_300 Hb_000497_300 Hb_000116_260--Hb_000497_300 Hb_007416_060 Hb_007416_060 Hb_000116_260--Hb_007416_060 Hb_164010_030 Hb_164010_030 Hb_000116_260--Hb_164010_030 Hb_000471_110 Hb_000471_110 Hb_000116_260--Hb_000471_110 Hb_000406_130 Hb_000406_130 Hb_000116_260--Hb_000406_130 Hb_001366_180 Hb_001366_180 Hb_005144_050--Hb_001366_180 Hb_005144_050--Hb_025098_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12349 2.7083 3.10994 6.88199 2.22141 4.31465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.73394 5.94121 6.27719 2.15348 5.28168

CAGE analysis