Hb_006469_090

Information

Type -
Description -
Location Contig6469: 116662-132015
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09230g
description POPTRDRAFT_643708, POPTRDRAFT_643709; hypothetical protein
nr
ID XP_012078117.1
description PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GUJ0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09230g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52353: 116699-118732 , PASA_asmbl_52354: 117811-118203 , PASA_asmbl_52355: 118816-123340 , PASA_asmbl_52358: 124739-132141 , PASA_asmbl_52359: 131596-131905 , PASA_asmbl_52360: 129805-132183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006469_090 0.0 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
2 Hb_001439_010 0.0770281172 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
3 Hb_007850_110 0.0828598476 - - MADS-box transcription factor 3 [Hevea brasiliensis]
4 Hb_000866_190 0.0874652668 - - transcription factor, putative [Ricinus communis]
5 Hb_003607_140 0.0947962222 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
6 Hb_005663_090 0.1012781979 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
7 Hb_000680_070 0.1021622416 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
8 Hb_010174_180 0.1096652383 - - protein binding protein, putative [Ricinus communis]
9 Hb_000337_030 0.1152570988 - - amino acid transporter, putative [Ricinus communis]
10 Hb_020805_070 0.1204367769 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
11 Hb_004607_160 0.1217100175 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
12 Hb_003879_020 0.1246941414 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
13 Hb_017098_050 0.1258573401 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
14 Hb_001675_270 0.1261797356 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
15 Hb_002635_020 0.1275825193 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
16 Hb_000077_400 0.1278397618 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_004162_320 0.1279880258 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
18 Hb_009554_030 0.128393517 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
19 Hb_021346_020 0.1290342404 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
20 Hb_015306_010 0.130614876 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]

Gene co-expression network

sample Hb_006469_090 Hb_006469_090 Hb_001439_010 Hb_001439_010 Hb_006469_090--Hb_001439_010 Hb_007850_110 Hb_007850_110 Hb_006469_090--Hb_007850_110 Hb_000866_190 Hb_000866_190 Hb_006469_090--Hb_000866_190 Hb_003607_140 Hb_003607_140 Hb_006469_090--Hb_003607_140 Hb_005663_090 Hb_005663_090 Hb_006469_090--Hb_005663_090 Hb_000680_070 Hb_000680_070 Hb_006469_090--Hb_000680_070 Hb_001439_010--Hb_000680_070 Hb_001439_010--Hb_005663_090 Hb_001439_010--Hb_003607_140 Hb_003879_020 Hb_003879_020 Hb_001439_010--Hb_003879_020 Hb_004032_110 Hb_004032_110 Hb_001439_010--Hb_004032_110 Hb_017098_050 Hb_017098_050 Hb_007850_110--Hb_017098_050 Hb_001109_130 Hb_001109_130 Hb_007850_110--Hb_001109_130 Hb_002635_010 Hb_002635_010 Hb_007850_110--Hb_002635_010 Hb_004607_160 Hb_004607_160 Hb_007850_110--Hb_004607_160 Hb_000130_480 Hb_000130_480 Hb_007850_110--Hb_000130_480 Hb_009554_030 Hb_009554_030 Hb_000866_190--Hb_009554_030 Hb_014250_010 Hb_014250_010 Hb_000866_190--Hb_014250_010 Hb_005766_010 Hb_005766_010 Hb_000866_190--Hb_005766_010 Hb_015306_010 Hb_015306_010 Hb_000866_190--Hb_015306_010 Hb_001135_010 Hb_001135_010 Hb_000866_190--Hb_001135_010 Hb_010174_180 Hb_010174_180 Hb_003607_140--Hb_010174_180 Hb_002635_020 Hb_002635_020 Hb_003607_140--Hb_002635_020 Hb_002316_020 Hb_002316_020 Hb_003607_140--Hb_002316_020 Hb_000210_040 Hb_000210_040 Hb_003607_140--Hb_000210_040 Hb_000337_030 Hb_000337_030 Hb_005663_090--Hb_000337_030 Hb_005663_090--Hb_000680_070 Hb_005168_020 Hb_005168_020 Hb_005663_090--Hb_005168_020 Hb_005731_070 Hb_005731_070 Hb_005663_090--Hb_005731_070 Hb_000680_070--Hb_000337_030 Hb_000680_070--Hb_007850_110 Hb_000680_070--Hb_004032_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0953564 4.48295 12.0556 11.6178 0.102733 0.11205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127344 0.229081 0.331703 12.9722 14.1944

CAGE analysis