Hb_006472_050

Information

Type -
Description -
Location Contig6472: 58651-65082
Sequence    

Annotation

kegg
ID cit:102607489
description ubiquitin-conjugating enzyme E2 7-like
nr
ID XP_010922368.1
description PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
swissprot
ID Q42541
description Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1
trembl
ID A0A0D2TMC8
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G100700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52382: 58664-65133 , PASA_asmbl_52383: 60802-61238
cDNA
(Sanger)
(ID:Location)		 004_E02.ab1: 58734-64919 , 017_B21.ab1: 58660-64695 , 018_J03.ab1: 58664-64780 , 029_G19.ab1: 58662-63983

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006472_050 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
2 Hb_002182_030 0.0850631728 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
3 Hb_001135_210 0.1006294883 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
4 Hb_000963_180 0.1014290134 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
5 Hb_000224_120 0.1018801931 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
6 Hb_000046_290 0.1034328175 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
7 Hb_001153_060 0.1036397998 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003581_260 0.1065831927 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
9 Hb_004056_030 0.1087422174 - - hypothetical protein 33 [Hevea brasiliensis]
10 Hb_000976_360 0.1093548839 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
11 Hb_011457_090 0.1096799353 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
12 Hb_003551_050 0.1097051387 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
13 Hb_006569_100 0.1109785297 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
14 Hb_001008_090 0.1132416863 - - cytochrome C oxidase, putative [Ricinus communis]
15 Hb_011953_020 0.1133628791 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
16 Hb_011377_050 0.1133828276 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
17 Hb_003207_170 0.1133855909 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
18 Hb_008544_010 0.1141358298 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
19 Hb_000061_300 0.114377862 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
20 Hb_000975_300 0.1145547574 - - Rab2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_006472_050 Hb_006472_050 Hb_002182_030 Hb_002182_030 Hb_006472_050--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_006472_050--Hb_001135_210 Hb_000963_180 Hb_000963_180 Hb_006472_050--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_006472_050--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_006472_050--Hb_000046_290 Hb_001153_060 Hb_001153_060 Hb_006472_050--Hb_001153_060 Hb_002182_030--Hb_001135_210 Hb_000975_300 Hb_000975_300 Hb_002182_030--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_002182_030--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_002182_030--Hb_002876_120 Hb_003581_260 Hb_003581_260 Hb_002182_030--Hb_003581_260 Hb_001232_140 Hb_001232_140 Hb_001135_210--Hb_001232_140 Hb_000099_130 Hb_000099_130 Hb_001135_210--Hb_000099_130 Hb_000784_030 Hb_000784_030 Hb_001135_210--Hb_000784_030 Hb_001157_010 Hb_001157_010 Hb_001135_210--Hb_001157_010 Hb_000023_340 Hb_000023_340 Hb_000963_180--Hb_000023_340 Hb_029866_070 Hb_029866_070 Hb_000963_180--Hb_029866_070 Hb_000046_110 Hb_000046_110 Hb_000963_180--Hb_000046_110 Hb_001461_010 Hb_001461_010 Hb_000963_180--Hb_001461_010 Hb_001829_060 Hb_001829_060 Hb_000963_180--Hb_001829_060 Hb_029866_040 Hb_029866_040 Hb_000963_180--Hb_029866_040 Hb_011457_090 Hb_011457_090 Hb_000224_120--Hb_011457_090 Hb_004336_050 Hb_004336_050 Hb_000224_120--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000224_120--Hb_000975_110 Hb_004374_140 Hb_004374_140 Hb_000224_120--Hb_004374_140 Hb_001307_090 Hb_001307_090 Hb_000224_120--Hb_001307_090 Hb_000224_120--Hb_000963_180 Hb_002471_080 Hb_002471_080 Hb_000046_290--Hb_002471_080 Hb_027625_010 Hb_027625_010 Hb_000046_290--Hb_027625_010 Hb_001775_110 Hb_001775_110 Hb_000046_290--Hb_001775_110 Hb_001360_050 Hb_001360_050 Hb_000046_290--Hb_001360_050 Hb_008544_010 Hb_008544_010 Hb_000046_290--Hb_008544_010 Hb_001191_090 Hb_001191_090 Hb_000046_290--Hb_001191_090 Hb_003207_170 Hb_003207_170 Hb_001153_060--Hb_003207_170 Hb_001153_060--Hb_011457_090 Hb_007926_060 Hb_007926_060 Hb_001153_060--Hb_007926_060 Hb_180301_010 Hb_180301_010 Hb_001153_060--Hb_180301_010 Hb_000898_050 Hb_000898_050 Hb_001153_060--Hb_000898_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.5307 21.8593 25.1684 72.6883 38.8915 86.7366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
150.464 158.976 248.07 40.4935 38.0535

CAGE analysis