Hb_006472_080

Information

Type -
Description -
Location Contig6472: 80060-80551
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52385: 75243-80707 , PASA_asmbl_52386: 80131-80336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006472_080 0.0 - - -
2 Hb_105328_010 0.2021911331 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
3 Hb_001085_150 0.2128645364 - - Purple acid phosphatase 15 [Theobroma cacao]
4 Hb_000820_060 0.2154270829 - - -
5 Hb_006472_070 0.219661882 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
6 Hb_000820_050 0.2224754091 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
7 Hb_000320_260 0.2326231581 - - unnamed protein product [Vitis vinifera]
8 Hb_000312_050 0.2472897927 - - transcription factor, putative [Ricinus communis]
9 Hb_000032_450 0.2476801849 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
10 Hb_000080_160 0.2498892393 - - Peroxin 13 [Theobroma cacao]
11 Hb_001488_190 0.2504595453 - - alpha-amylase, putative [Ricinus communis]
12 Hb_004449_060 0.2533312366 - - PREDICTED: uncharacterized protein LOC105631660 [Jatropha curcas]
13 Hb_021650_020 0.254852351 - - nitrate transporter, putative [Ricinus communis]
14 Hb_002475_080 0.2601987227 transcription factor TF Family: PHD PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Jatropha curcas]
15 Hb_000244_150 0.2649677669 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
16 Hb_008747_010 0.2667645435 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
17 Hb_021576_120 0.2700087546 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
18 Hb_000454_040 0.2792134003 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
19 Hb_000032_460 0.2812773296 - - calcineurin B, putative [Ricinus communis]
20 Hb_005622_020 0.2819503392 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006472_080 Hb_006472_080 Hb_105328_010 Hb_105328_010 Hb_006472_080--Hb_105328_010 Hb_001085_150 Hb_001085_150 Hb_006472_080--Hb_001085_150 Hb_000820_060 Hb_000820_060 Hb_006472_080--Hb_000820_060 Hb_006472_070 Hb_006472_070 Hb_006472_080--Hb_006472_070 Hb_000820_050 Hb_000820_050 Hb_006472_080--Hb_000820_050 Hb_000320_260 Hb_000320_260 Hb_006472_080--Hb_000320_260 Hb_000032_450 Hb_000032_450 Hb_105328_010--Hb_000032_450 Hb_105328_010--Hb_001085_150 Hb_083940_010 Hb_083940_010 Hb_105328_010--Hb_083940_010 Hb_105328_010--Hb_000820_050 Hb_000703_280 Hb_000703_280 Hb_105328_010--Hb_000703_280 Hb_000804_020 Hb_000804_020 Hb_001085_150--Hb_000804_020 Hb_001085_150--Hb_083940_010 Hb_003025_030 Hb_003025_030 Hb_001085_150--Hb_003025_030 Hb_003659_010 Hb_003659_010 Hb_001085_150--Hb_003659_010 Hb_005545_020 Hb_005545_020 Hb_001085_150--Hb_005545_020 Hb_000820_060--Hb_000820_050 Hb_000115_010 Hb_000115_010 Hb_000820_060--Hb_000115_010 Hb_000820_060--Hb_105328_010 Hb_000820_060--Hb_000032_450 Hb_006268_020 Hb_006268_020 Hb_000820_060--Hb_006268_020 Hb_004193_010 Hb_004193_010 Hb_006472_070--Hb_004193_010 Hb_000010_300 Hb_000010_300 Hb_006472_070--Hb_000010_300 Hb_001016_140 Hb_001016_140 Hb_006472_070--Hb_001016_140 Hb_006472_070--Hb_001085_150 Hb_006472_070--Hb_000320_260 Hb_000820_050--Hb_000115_010 Hb_000820_050--Hb_006268_020 Hb_000820_050--Hb_000032_450 Hb_000320_260--Hb_000010_300 Hb_009541_010 Hb_009541_010 Hb_000320_260--Hb_009541_010 Hb_002662_040 Hb_002662_040 Hb_000320_260--Hb_002662_040 Hb_000526_010 Hb_000526_010 Hb_000320_260--Hb_000526_010 Hb_004163_030 Hb_004163_030 Hb_000320_260--Hb_004163_030 Hb_000320_260--Hb_105328_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.937074 0.860993 5.79051 3.15071 0 0.148188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 4.99742 3.52641 2.26136

CAGE analysis