Hb_006474_010

Information

Type -
Description -
Location Contig6474: 4731-11560
Sequence    

Annotation

kegg
ID mdm:103453493
description uncharacterized LOC103453493
nr
ID CAN63950.1
description hypothetical protein VITISV_032357 [Vitis vinifera]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5BX03
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1
Gene Ontology
ID GO:0004190
description hypothetical protein VITISV_032357

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006474_010 0.0 - - hypothetical protein VITISV_032357 [Vitis vinifera]
2 Hb_003567_020 0.1833028875 - - conserved hypothetical protein [Ricinus communis]
3 Hb_121041_010 0.1922440785 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
4 Hb_180367_010 0.196597536 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
5 Hb_003739_040 0.1980441138 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
6 Hb_042463_070 0.2129785434 - - 60S ribosomal protein L16, putative [Ricinus communis]
7 Hb_158203_010 0.2152047373 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_017225_010 0.2160883775 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
9 Hb_034168_070 0.2197248022 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
10 Hb_013420_050 0.2229889152 - - hypothetical protein (mitochondrion) [Vicia faba]
11 Hb_033066_030 0.2234493804 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
12 Hb_002060_040 0.2238444802 - - putative polyprotein [Oryza sativa Japonica Group]
13 Hb_062192_020 0.2254564494 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
14 Hb_034168_010 0.2263920876 - - hypothetical protein [Azospirillum sp. CAG:260]
15 Hb_013420_040 0.2264909979 - - unnamed protein product [Vitis vinifera]
16 Hb_062273_010 0.228538481 - - ATP synthase F0 subunit 9 [Chara vulgaris]
17 Hb_156746_010 0.2286763906 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
18 Hb_042463_020 0.2287220401 - - conserved hypothetical protein [Ricinus communis]
19 Hb_031866_030 0.2312840305 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
20 Hb_000060_060 0.231303526 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22940 [Jatropha curcas]

Gene co-expression network

sample Hb_006474_010 Hb_006474_010 Hb_003567_020 Hb_003567_020 Hb_006474_010--Hb_003567_020 Hb_121041_010 Hb_121041_010 Hb_006474_010--Hb_121041_010 Hb_180367_010 Hb_180367_010 Hb_006474_010--Hb_180367_010 Hb_003739_040 Hb_003739_040 Hb_006474_010--Hb_003739_040 Hb_042463_070 Hb_042463_070 Hb_006474_010--Hb_042463_070 Hb_158203_010 Hb_158203_010 Hb_006474_010--Hb_158203_010 Hb_003567_020--Hb_180367_010 Hb_003567_020--Hb_003739_040 Hb_017415_010 Hb_017415_010 Hb_003567_020--Hb_017415_010 Hb_003567_020--Hb_121041_010 Hb_002149_030 Hb_002149_030 Hb_003567_020--Hb_002149_030 Hb_003567_020--Hb_158203_010 Hb_121041_010--Hb_158203_010 Hb_121041_010--Hb_003739_040 Hb_121041_010--Hb_180367_010 Hb_054127_020 Hb_054127_020 Hb_121041_010--Hb_054127_020 Hb_180367_010--Hb_003739_040 Hb_180367_010--Hb_017415_010 Hb_003157_020 Hb_003157_020 Hb_180367_010--Hb_003157_020 Hb_180367_010--Hb_002149_030 Hb_164415_010 Hb_164415_010 Hb_180367_010--Hb_164415_010 Hb_006599_040 Hb_006599_040 Hb_003739_040--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_003739_040--Hb_004145_030 Hb_174010_030 Hb_174010_030 Hb_003739_040--Hb_174010_030 Hb_000777_010 Hb_000777_010 Hb_003739_040--Hb_000777_010 Hb_041813_030 Hb_041813_030 Hb_042463_070--Hb_041813_030 Hb_156746_010 Hb_156746_010 Hb_042463_070--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_042463_070--Hb_077242_020 Hb_013420_050 Hb_013420_050 Hb_042463_070--Hb_013420_050 Hb_006040_030 Hb_006040_030 Hb_042463_070--Hb_006040_030 Hb_012163_050 Hb_012163_050 Hb_042463_070--Hb_012163_050 Hb_056095_010 Hb_056095_010 Hb_158203_010--Hb_056095_010 Hb_158203_010--Hb_180367_010 Hb_004445_030 Hb_004445_030 Hb_158203_010--Hb_004445_030 Hb_158203_010--Hb_054127_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.16488 0.610108 1.18081 0.0358304 0.472585 0.461232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0137524 1.07216 5.13786 49.3395

CAGE analysis