Hb_006478_020

Information

Type -
Description -
Location Contig6478: 16794-18674
Sequence    

Annotation

kegg
ID rcu:RCOM_0646210
description hypothetical protein
nr
ID XP_012092184.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID Q6AZB8
description Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
trembl
ID A0A067JN16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21886 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52387: 16952-18727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_020 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_000116_270 0.0628608034 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
3 Hb_000599_250 0.0639133581 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
4 Hb_003025_100 0.0677148992 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
5 Hb_000172_290 0.0683836988 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
6 Hb_001971_010 0.0686444557 - - F23N19.4 [Arabidopsis thaliana]
7 Hb_001366_180 0.0687749204 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
8 Hb_008841_020 0.0698236794 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
9 Hb_000207_330 0.0710346618 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
10 Hb_001252_130 0.0741379585 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
11 Hb_006274_030 0.0747989171 - - F-box and wd40 domain protein, putative [Ricinus communis]
12 Hb_002289_080 0.0750942772 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
13 Hb_004934_100 0.0753356698 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001711_020 0.0761861613 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
15 Hb_005144_050 0.0785662231 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
16 Hb_000260_350 0.0794706619 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000477_060 0.0808188729 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
18 Hb_026198_070 0.0815357559 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
19 Hb_024128_020 0.0828224127 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
20 Hb_010931_130 0.0846236117 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_006478_020 Hb_006478_020 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_001971_010 Hb_001971_010 Hb_006478_020--Hb_001971_010 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180 Hb_001159_130 Hb_001159_130 Hb_000116_270--Hb_001159_130 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_000200_020 Hb_000200_020 Hb_000116_270--Hb_000200_020 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_004934_100 Hb_004934_100 Hb_000599_250--Hb_004934_100 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000375_350 Hb_000375_350 Hb_000599_250--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_001818_100 Hb_001818_100 Hb_003025_100--Hb_001818_100 Hb_000260_350 Hb_000260_350 Hb_003025_100--Hb_000260_350 Hb_012498_010 Hb_012498_010 Hb_003025_100--Hb_012498_010 Hb_091296_010 Hb_091296_010 Hb_003025_100--Hb_091296_010 Hb_003025_100--Hb_000116_270 Hb_054865_150 Hb_054865_150 Hb_000172_290--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_002685_210 Hb_002685_210 Hb_000172_290--Hb_002685_210 Hb_000172_290--Hb_001971_010 Hb_001252_130 Hb_001252_130 Hb_001971_010--Hb_001252_130 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_002235_250 Hb_002235_250 Hb_001971_010--Hb_002235_250 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090 Hb_006274_030 Hb_006274_030 Hb_001366_180--Hb_006274_030 Hb_005144_050 Hb_005144_050 Hb_001366_180--Hb_005144_050 Hb_000289_110 Hb_000289_110 Hb_001366_180--Hb_000289_110 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_002014_030 Hb_002014_030 Hb_001366_180--Hb_002014_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.62016 3.3915 4.7297 8.89146 3.82275 6.69837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.93583 7.14242 8.09709 5.35618 7.56608

CAGE analysis