Hb_006478_040

Information

Type -
Description -
Location Contig6478: 32077-45190
Sequence    

Annotation

kegg
ID rcu:RCOM_0646250
description acetyl-CoA carboxylase, putative (EC:6.4.1.4)
nr
ID XP_012092191.1
description PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
swissprot
ID Q42777
description Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2
trembl
ID A0A067JC78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21888 PE=4 SV=1
Gene Ontology
ID GO:0004075
description methylcrotonoyl- carboxylase subunit mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52391: 32227-37682 , PASA_asmbl_52392: 37702-45064 , PASA_asmbl_52393: 43923-44384 , PASA_asmbl_52394: 40518-40915 , PASA_asmbl_52395: 37716-40423 , PASA_asmbl_52397: 40916-41129 , PASA_asmbl_52398: 41537-41942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_040 0.0 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
2 Hb_000340_400 0.063344183 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_001546_080 0.0695033326 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
4 Hb_003030_060 0.0729283804 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
5 Hb_000318_250 0.0741969471 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
6 Hb_005116_060 0.0744434015 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
7 Hb_001470_030 0.0786463705 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
8 Hb_007035_050 0.0811812029 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
9 Hb_000010_190 0.0833526481 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
10 Hb_003001_080 0.0847632116 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
11 Hb_004837_180 0.0876609947 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_003849_110 0.0892679793 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
13 Hb_005725_210 0.0896976794 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
14 Hb_001862_210 0.0899199611 - - PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
15 Hb_019280_050 0.0901131457 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
16 Hb_000484_130 0.091428848 - - splicing factor, putative [Ricinus communis]
17 Hb_000976_310 0.0915658318 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
18 Hb_001723_020 0.0924209172 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
19 Hb_002184_110 0.0938751109 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
20 Hb_001030_020 0.0942406234 - - Poly(A) polymerase alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_006478_040 Hb_006478_040 Hb_000340_400 Hb_000340_400 Hb_006478_040--Hb_000340_400 Hb_001546_080 Hb_001546_080 Hb_006478_040--Hb_001546_080 Hb_003030_060 Hb_003030_060 Hb_006478_040--Hb_003030_060 Hb_000318_250 Hb_000318_250 Hb_006478_040--Hb_000318_250 Hb_005116_060 Hb_005116_060 Hb_006478_040--Hb_005116_060 Hb_001470_030 Hb_001470_030 Hb_006478_040--Hb_001470_030 Hb_004837_180 Hb_004837_180 Hb_000340_400--Hb_004837_180 Hb_000340_400--Hb_005116_060 Hb_003001_080 Hb_003001_080 Hb_000340_400--Hb_003001_080 Hb_007035_050 Hb_007035_050 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_001546_080--Hb_000318_250 Hb_000317_050 Hb_000317_050 Hb_001546_080--Hb_000317_050 Hb_001546_080--Hb_003030_060 Hb_000329_710 Hb_000329_710 Hb_001546_080--Hb_000329_710 Hb_005489_020 Hb_005489_020 Hb_001546_080--Hb_005489_020 Hb_010712_050 Hb_010712_050 Hb_003030_060--Hb_010712_050 Hb_001225_040 Hb_001225_040 Hb_003030_060--Hb_001225_040 Hb_003030_060--Hb_004837_180 Hb_001080_230 Hb_001080_230 Hb_003030_060--Hb_001080_230 Hb_012194_030 Hb_012194_030 Hb_003030_060--Hb_012194_030 Hb_000130_410 Hb_000130_410 Hb_000318_250--Hb_000130_410 Hb_000868_090 Hb_000868_090 Hb_000318_250--Hb_000868_090 Hb_000732_010 Hb_000732_010 Hb_000318_250--Hb_000732_010 Hb_000318_250--Hb_000317_050 Hb_000318_250--Hb_000329_710 Hb_005116_060--Hb_007035_050 Hb_095296_010 Hb_095296_010 Hb_005116_060--Hb_095296_010 Hb_001030_020 Hb_001030_020 Hb_005116_060--Hb_001030_020 Hb_005116_060--Hb_003001_080 Hb_001470_030--Hb_001030_020 Hb_002078_350 Hb_002078_350 Hb_001470_030--Hb_002078_350 Hb_003938_090 Hb_003938_090 Hb_001470_030--Hb_003938_090 Hb_010423_030 Hb_010423_030 Hb_001470_030--Hb_010423_030 Hb_000152_500 Hb_000152_500 Hb_001470_030--Hb_000152_500 Hb_000373_070 Hb_000373_070 Hb_001470_030--Hb_000373_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78264 11.9907 8.31561 4.82359 6.14365 6.73978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.30411 11.2015 6.722 7.2931 7.79306

CAGE analysis