Hb_006478_070

Information

Type -
Description -
Location Contig6478: 58712-60340
Sequence    

Annotation

kegg
ID vvi:100852813
description uncharacterized LOC100852813
nr
ID XP_012092194.1
description PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
swissprot
ID Q7SZP2
description UPF0690 protein C1orf52 homolog OS=Danio rerio GN=zgc:65873 PE=1 SV=1
trembl
ID A0A067JN21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21891 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52404: 58648-60368 , PASA_asmbl_52405: 58853-60393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_070 0.0 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
2 Hb_012807_120 0.0663815482 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_003506_040 0.0714345589 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
4 Hb_001140_080 0.07696809 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
5 Hb_000320_440 0.0784570928 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
6 Hb_000172_530 0.078458588 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
7 Hb_001846_080 0.0824393819 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
8 Hb_000270_450 0.0884863785 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
9 Hb_000088_180 0.088693326 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
10 Hb_001776_080 0.0887660593 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
11 Hb_000365_350 0.0961925292 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
12 Hb_000483_370 0.0981501776 - - conserved hypothetical protein [Ricinus communis]
13 Hb_174865_050 0.0986342421 - - PREDICTED: neuroguidin [Jatropha curcas]
14 Hb_000282_150 0.0995994224 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
15 Hb_000176_140 0.102377279 - - PREDICTED: bystin [Jatropha curcas]
16 Hb_006173_020 0.1033821261 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
17 Hb_003777_220 0.1049303473 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
18 Hb_113216_010 0.1067506083 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
19 Hb_002172_030 0.1085740594 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
20 Hb_004032_460 0.1086737127 - - -

Gene co-expression network

sample Hb_006478_070 Hb_006478_070 Hb_012807_120 Hb_012807_120 Hb_006478_070--Hb_012807_120 Hb_003506_040 Hb_003506_040 Hb_006478_070--Hb_003506_040 Hb_001140_080 Hb_001140_080 Hb_006478_070--Hb_001140_080 Hb_000320_440 Hb_000320_440 Hb_006478_070--Hb_000320_440 Hb_000172_530 Hb_000172_530 Hb_006478_070--Hb_000172_530 Hb_001846_080 Hb_001846_080 Hb_006478_070--Hb_001846_080 Hb_012807_120--Hb_001140_080 Hb_000365_350 Hb_000365_350 Hb_012807_120--Hb_000365_350 Hb_012807_120--Hb_000320_440 Hb_000088_180 Hb_000088_180 Hb_012807_120--Hb_000088_180 Hb_000573_040 Hb_000573_040 Hb_012807_120--Hb_000573_040 Hb_003506_040--Hb_001140_080 Hb_001776_080 Hb_001776_080 Hb_003506_040--Hb_001776_080 Hb_003506_040--Hb_012807_120 Hb_000300_540 Hb_000300_540 Hb_003506_040--Hb_000300_540 Hb_160818_010 Hb_160818_010 Hb_003506_040--Hb_160818_010 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_000270_450 Hb_000270_450 Hb_001140_080--Hb_000270_450 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010 Hb_000320_440--Hb_001776_080 Hb_000320_440--Hb_000088_180 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_001523_010 Hb_001523_010 Hb_000172_530--Hb_001523_010 Hb_000172_530--Hb_001846_080 Hb_000466_060 Hb_000466_060 Hb_000172_530--Hb_000466_060 Hb_005016_030 Hb_005016_030 Hb_000172_530--Hb_005016_030 Hb_000483_370 Hb_000483_370 Hb_001846_080--Hb_000483_370 Hb_002172_030 Hb_002172_030 Hb_001846_080--Hb_002172_030 Hb_012654_020 Hb_012654_020 Hb_001846_080--Hb_012654_020 Hb_001846_080--Hb_000320_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
746.322 75.8876 38.7346 43.4914 635.378 725.703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
305.978 185.841 160.717 121.839 25.7934

CAGE analysis