Hb_006478_150

Information

Type -
Description -
Location Contig6478: 114282-116706
Sequence    

Annotation

kegg
ID rcu:RCOM_0286390
description mitochondrial ribosomal protein L24, putative
nr
ID XP_002532971.1
description mitochondrial ribosomal protein L24, putative [Ricinus communis]
swissprot
ID Q47LK4
description 50S ribosomal protein L24 OS=Thermobifida fusca (strain YX) GN=rplX PE=3 SV=1
trembl
ID B9T402
description Mitochondrial ribosomal protein L24, putative OS=Ricinus communis GN=RCOM_0286390 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52408: 114289-116619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_150 0.0 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
2 Hb_004567_120 0.0623101624 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
3 Hb_004216_050 0.063296455 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
4 Hb_033642_080 0.0774860681 - - V-type proton ATPase subunit E [Hevea brasiliensis]
5 Hb_091433_020 0.0811231387 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
6 Hb_000417_360 0.0820337024 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
7 Hb_000441_110 0.0824335549 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
8 Hb_086639_090 0.0828792558 - - 60S ribosomal protein L7a, putative [Ricinus communis]
9 Hb_011671_100 0.0851079329 - - 60S ribosomal protein L15 [Populus trichocarpa]
10 Hb_002676_090 0.0866733719 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
11 Hb_000496_120 0.0884155457 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
12 Hb_001979_040 0.0888702253 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
13 Hb_002925_030 0.0893873429 - - 40S ribosomal protein S16B [Hevea brasiliensis]
14 Hb_000920_110 0.0898028656 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
15 Hb_002056_050 0.0899522413 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
16 Hb_010068_020 0.0911502941 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
17 Hb_000136_170 0.0912897993 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
18 Hb_001085_120 0.0918573742 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
19 Hb_001085_270 0.0920665896 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
20 Hb_006478_160 0.0925487488 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_006478_150 Hb_006478_150 Hb_004567_120 Hb_004567_120 Hb_006478_150--Hb_004567_120 Hb_004216_050 Hb_004216_050 Hb_006478_150--Hb_004216_050 Hb_033642_080 Hb_033642_080 Hb_006478_150--Hb_033642_080 Hb_091433_020 Hb_091433_020 Hb_006478_150--Hb_091433_020 Hb_000417_360 Hb_000417_360 Hb_006478_150--Hb_000417_360 Hb_000441_110 Hb_000441_110 Hb_006478_150--Hb_000441_110 Hb_004567_120--Hb_004216_050 Hb_002676_090 Hb_002676_090 Hb_004567_120--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_004567_120--Hb_005568_120 Hb_011644_030 Hb_011644_030 Hb_004567_120--Hb_011644_030 Hb_000136_170 Hb_000136_170 Hb_004567_120--Hb_000136_170 Hb_005305_150 Hb_005305_150 Hb_004216_050--Hb_005305_150 Hb_010068_020 Hb_010068_020 Hb_004216_050--Hb_010068_020 Hb_000496_120 Hb_000496_120 Hb_004216_050--Hb_000496_120 Hb_004767_080 Hb_004767_080 Hb_004216_050--Hb_004767_080 Hb_033642_080--Hb_091433_020 Hb_033642_080--Hb_004567_120 Hb_033642_080--Hb_000496_120 Hb_033642_080--Hb_000417_360 Hb_180074_010 Hb_180074_010 Hb_033642_080--Hb_180074_010 Hb_091433_020--Hb_000417_360 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_000920_110 Hb_000920_110 Hb_000417_360--Hb_000920_110 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140 Hb_003540_240 Hb_003540_240 Hb_000441_110--Hb_003540_240 Hb_000441_110--Hb_011671_100 Hb_002056_050 Hb_002056_050 Hb_000441_110--Hb_002056_050 Hb_000441_110--Hb_004567_120 Hb_004453_020 Hb_004453_020 Hb_000441_110--Hb_004453_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.964 15.329 17.0647 15.0403 18.0533 22.1071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.5792 80.7996 33.967 32.2527 15.5219

CAGE analysis