Hb_006478_160

Information

Type -
Description -
Location Contig6478: 117676-119694
Sequence    

Annotation

kegg
ID vvi:100852565
description proteasome subunit beta type-2-A
nr
ID ADR70864.1
description 20S proteasome beta subunit D1 [Hevea brasiliensis]
swissprot
ID O23714
description Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1
trembl
ID V5IV12
description 20S proteasome beta subunit D1 OS=Hevea brasiliensis GN=PBD1 PE=2 SV=1
Gene Ontology
ID GO:0005839
description proteasome subunit beta type-2-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52411: 117667-119766
cDNA
(Sanger)
(ID:Location)		 008_E06.ab1: 117676-119546 , 029_A10.ab1: 117679-118088 , 034_C18.ab1: 117679-119544

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_160 0.0 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
2 Hb_000567_410 0.0535937161 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
3 Hb_000731_190 0.0541542228 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
4 Hb_000093_110 0.0705502083 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
5 Hb_000735_040 0.0723282175 - - 60S ribosomal protein L32A [Hevea brasiliensis]
6 Hb_000788_010 0.0781218086 - - 40S ribosomal protein S16A [Hevea brasiliensis]
7 Hb_008921_020 0.0790224983 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
8 Hb_000417_360 0.0790799383 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
9 Hb_091433_020 0.0854704218 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
10 Hb_002811_080 0.0884711871 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
11 Hb_000576_060 0.0909636687 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
12 Hb_008772_010 0.091096597 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011236_010 0.0917748921 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
14 Hb_001979_040 0.0918141537 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
15 Hb_001085_270 0.0918327689 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
16 Hb_003929_150 0.0920678691 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
17 Hb_002235_080 0.0921461189 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
18 Hb_006478_150 0.0925487488 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
19 Hb_001085_120 0.093459435 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
20 Hb_000035_370 0.0938123999 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006478_160 Hb_006478_160 Hb_000567_410 Hb_000567_410 Hb_006478_160--Hb_000567_410 Hb_000731_190 Hb_000731_190 Hb_006478_160--Hb_000731_190 Hb_000093_110 Hb_000093_110 Hb_006478_160--Hb_000093_110 Hb_000735_040 Hb_000735_040 Hb_006478_160--Hb_000735_040 Hb_000788_010 Hb_000788_010 Hb_006478_160--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_006478_160--Hb_008921_020 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_000417_360 Hb_000417_360 Hb_000731_190--Hb_000417_360 Hb_000571_020 Hb_000571_020 Hb_000731_190--Hb_000571_020 Hb_091433_020 Hb_091433_020 Hb_000731_190--Hb_091433_020 Hb_001979_040 Hb_001979_040 Hb_000731_190--Hb_001979_040 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_000093_110--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000093_110--Hb_002588_010 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000506_070 Hb_000506_070 Hb_000735_040--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_000735_040--Hb_001141_140 Hb_000735_040--Hb_008921_020 Hb_003018_020 Hb_003018_020 Hb_000735_040--Hb_003018_020 Hb_001369_170 Hb_001369_170 Hb_000788_010--Hb_001369_170 Hb_000576_060 Hb_000576_060 Hb_000788_010--Hb_000576_060 Hb_000788_010--Hb_000567_410 Hb_000788_010--Hb_001085_270 Hb_000788_010--Hb_002811_080 Hb_008921_020--Hb_005063_050 Hb_008921_020--Hb_000576_060 Hb_000062_650 Hb_000062_650 Hb_008921_020--Hb_000062_650 Hb_008921_020--Hb_000506_070 Hb_008921_020--Hb_001141_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9663 39.6849 55.4634 51.9682 34.6379 35.0919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.0729 233.257 92.0285 54.718 37.1365

CAGE analysis