Hb_006478_170

Information

Type -
Description -
Location Contig6478: 120011-121096
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23360g
description POPTRDRAFT_864160; hypothetical protein
nr
ID XP_002306782.2
description hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H8A8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23360g PE=4 SV=2
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein at2g13820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 020_B23r.ab1: 122037-123000

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_170 0.0 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
2 Hb_014510_010 0.1933675497 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
3 Hb_004296_030 0.2238522266 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
4 Hb_005288_030 0.236704822 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
5 Hb_000220_140 0.236752726 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
6 Hb_003777_010 0.2474376436 - - -
7 Hb_005045_040 0.2641603779 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
8 Hb_005736_070 0.2691018328 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
9 Hb_000215_340 0.2835337585 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
10 Hb_000042_250 0.2848880574 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
11 Hb_122911_020 0.2884914009 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_002656_010 0.308854577 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
13 Hb_000165_190 0.3153606136 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
14 Hb_001545_030 0.3154257428 - - -
15 Hb_008643_150 0.3171328492 - - hypothetical protein CISIN_1g0034652mg, partial [Citrus sinensis]
16 Hb_050399_010 0.3187160502 - - PREDICTED: protein LYK5-like [Jatropha curcas]
17 Hb_000626_040 0.3242188118 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
18 Hb_005622_080 0.3260793008 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
19 Hb_011437_030 0.3271413608 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
20 Hb_002660_100 0.3294646388 - - plasma membrane intrinsic protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_006478_170 Hb_006478_170 Hb_014510_010 Hb_014510_010 Hb_006478_170--Hb_014510_010 Hb_004296_030 Hb_004296_030 Hb_006478_170--Hb_004296_030 Hb_005288_030 Hb_005288_030 Hb_006478_170--Hb_005288_030 Hb_000220_140 Hb_000220_140 Hb_006478_170--Hb_000220_140 Hb_003777_010 Hb_003777_010 Hb_006478_170--Hb_003777_010 Hb_005045_040 Hb_005045_040 Hb_006478_170--Hb_005045_040 Hb_014510_010--Hb_004296_030 Hb_000215_340 Hb_000215_340 Hb_014510_010--Hb_000215_340 Hb_001545_030 Hb_001545_030 Hb_014510_010--Hb_001545_030 Hb_005841_080 Hb_005841_080 Hb_014510_010--Hb_005841_080 Hb_001338_050 Hb_001338_050 Hb_014510_010--Hb_001338_050 Hb_004296_030--Hb_001545_030 Hb_004296_030--Hb_005045_040 Hb_004296_030--Hb_000220_140 Hb_008643_150 Hb_008643_150 Hb_004296_030--Hb_008643_150 Hb_004156_010 Hb_004156_010 Hb_005288_030--Hb_004156_010 Hb_000165_190 Hb_000165_190 Hb_005288_030--Hb_000165_190 Hb_002660_100 Hb_002660_100 Hb_005288_030--Hb_002660_100 Hb_051100_010 Hb_051100_010 Hb_005288_030--Hb_051100_010 Hb_001481_020 Hb_001481_020 Hb_005288_030--Hb_001481_020 Hb_000608_020 Hb_000608_020 Hb_005288_030--Hb_000608_020 Hb_003747_110 Hb_003747_110 Hb_000220_140--Hb_003747_110 Hb_001649_120 Hb_001649_120 Hb_000220_140--Hb_001649_120 Hb_000220_140--Hb_003777_010 Hb_122911_020 Hb_122911_020 Hb_000220_140--Hb_122911_020 Hb_003777_010--Hb_005045_040 Hb_001338_060 Hb_001338_060 Hb_003777_010--Hb_001338_060 Hb_071586_010 Hb_071586_010 Hb_003777_010--Hb_071586_010 Hb_001462_020 Hb_001462_020 Hb_003777_010--Hb_001462_020 Hb_096671_010 Hb_096671_010 Hb_003777_010--Hb_096671_010 Hb_005045_040--Hb_001338_060 Hb_108886_010 Hb_108886_010 Hb_005045_040--Hb_108886_010 Hb_005045_040--Hb_001545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.606971 0.031238 0.0435827 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.263489 0.367796 0

CAGE analysis