Hb_006478_180

Information

Type -
Description -
Location Contig6478: 121992-122969
Sequence    

Annotation

kegg
ID rcu:RCOM_0646530
description Nonspecific lipid-transfer protein precursor, putative
nr
ID XP_002524756.1
description Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
swissprot
ID O64864
description Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1
trembl
ID B9SFI7
description Nonspecific lipid-transfer protein, putative OS=Ricinus communis GN=RCOM_0646530 PE=4 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein at2g13820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52412: 121920-123000
cDNA
(Sanger)
(ID:Location)		 020_B23.ab1: 121920-122892

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_180 0.0 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
2 Hb_003538_020 0.1186584432 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
3 Hb_002758_040 0.1209210954 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_132880_030 0.1235942986 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
5 Hb_112082_030 0.1255083343 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_005511_050 0.1266875299 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
7 Hb_000010_120 0.1375075147 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
8 Hb_001999_220 0.1387847411 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
9 Hb_000025_510 0.1427584617 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
10 Hb_000251_100 0.148905421 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_002325_020 0.1503664276 - - zinc finger protein, putative [Ricinus communis]
12 Hb_002234_150 0.155015132 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
13 Hb_008406_010 0.159978961 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
14 Hb_000220_160 0.1612344172 - - hypothetical protein B456_003G184800 [Gossypium raimondii]
15 Hb_001357_260 0.1615932844 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_039342_030 0.1634523252 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001080_310 0.163732078 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
18 Hb_016172_010 0.1639819331 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
19 Hb_027445_090 0.1671656147 - - oleosin 18.2 kDa-like [Jatropha curcas]
20 Hb_006196_020 0.1686970599 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]

Gene co-expression network

sample Hb_006478_180 Hb_006478_180 Hb_003538_020 Hb_003538_020 Hb_006478_180--Hb_003538_020 Hb_002758_040 Hb_002758_040 Hb_006478_180--Hb_002758_040 Hb_132880_030 Hb_132880_030 Hb_006478_180--Hb_132880_030 Hb_112082_030 Hb_112082_030 Hb_006478_180--Hb_112082_030 Hb_005511_050 Hb_005511_050 Hb_006478_180--Hb_005511_050 Hb_000010_120 Hb_000010_120 Hb_006478_180--Hb_000010_120 Hb_002534_080 Hb_002534_080 Hb_003538_020--Hb_002534_080 Hb_003891_060 Hb_003891_060 Hb_003538_020--Hb_003891_060 Hb_003538_020--Hb_112082_030 Hb_003538_020--Hb_005511_050 Hb_003538_020--Hb_002758_040 Hb_016172_010 Hb_016172_010 Hb_002758_040--Hb_016172_010 Hb_010712_020 Hb_010712_020 Hb_002758_040--Hb_010712_020 Hb_000160_230 Hb_000160_230 Hb_002758_040--Hb_000160_230 Hb_001999_220 Hb_001999_220 Hb_002758_040--Hb_001999_220 Hb_027402_120 Hb_027402_120 Hb_002758_040--Hb_027402_120 Hb_007810_140 Hb_007810_140 Hb_002758_040--Hb_007810_140 Hb_132880_030--Hb_005511_050 Hb_000220_160 Hb_000220_160 Hb_132880_030--Hb_000220_160 Hb_000251_100 Hb_000251_100 Hb_132880_030--Hb_000251_100 Hb_001080_310 Hb_001080_310 Hb_132880_030--Hb_001080_310 Hb_132880_030--Hb_112082_030 Hb_001357_260 Hb_001357_260 Hb_112082_030--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_112082_030--Hb_000189_260 Hb_002917_010 Hb_002917_010 Hb_112082_030--Hb_002917_010 Hb_008406_010 Hb_008406_010 Hb_112082_030--Hb_008406_010 Hb_112082_030--Hb_005511_050 Hb_002890_400 Hb_002890_400 Hb_112082_030--Hb_002890_400 Hb_005511_050--Hb_000160_230 Hb_005511_050--Hb_007810_140 Hb_039342_030 Hb_039342_030 Hb_005511_050--Hb_039342_030 Hb_005511_050--Hb_001999_220 Hb_000859_040 Hb_000859_040 Hb_005511_050--Hb_000859_040 Hb_002325_020 Hb_002325_020 Hb_000010_120--Hb_002325_020 Hb_000007_110 Hb_000007_110 Hb_000010_120--Hb_000007_110 Hb_000010_120--Hb_002758_040 Hb_011382_030 Hb_011382_030 Hb_000010_120--Hb_011382_030 Hb_000010_120--Hb_001999_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0294745 0.902021 0.15803 0.0821756 0.0552947 0.0260658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0678238 0.213318 0 6.04479 0

CAGE analysis