Hb_006483_060

Information

Type -
Description -
Location Contig6483: 64700-65086
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10940g
description POPTRDRAFT_655136; hypothetical protein
nr
ID XP_012079236.1
description PREDICTED: protein RALF-like 34 [Jatropha curcas]
swissprot
ID Q9FHA6
description Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1
trembl
ID A0A067KI40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12401 PE=4 SV=1
Gene Ontology
ID GO:0007154
description protein ralf-like 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52446: 64498-65157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006483_060 0.0 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
2 Hb_003647_040 0.1502778712 - - conserved hypothetical protein [Ricinus communis]
3 Hb_023226_030 0.1521790033 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
4 Hb_001178_090 0.1528568175 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
5 Hb_000032_430 0.1568024112 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000203_070 0.1605341017 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
7 Hb_006831_080 0.1611847907 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
8 Hb_087427_010 0.1646180609 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
9 Hb_148346_010 0.1675838832 - - -
10 Hb_002119_040 0.1691841101 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_005694_180 0.1696853217 - - PREDICTED: cytochrome b5 [Jatropha curcas]
12 Hb_000866_320 0.1701608162 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_034507_060 0.170904782 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
14 Hb_012727_010 0.1728418783 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
15 Hb_002999_080 0.1738735793 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
16 Hb_003529_240 0.1741785574 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]
17 Hb_007044_220 0.174512879 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_033053_020 0.174902909 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
19 Hb_002003_090 0.1761977311 - - PREDICTED: TPR repeat-containing protein ZIP4 isoform X1 [Jatropha curcas]
20 Hb_001195_420 0.1776082801 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_006483_060 Hb_006483_060 Hb_003647_040 Hb_003647_040 Hb_006483_060--Hb_003647_040 Hb_023226_030 Hb_023226_030 Hb_006483_060--Hb_023226_030 Hb_001178_090 Hb_001178_090 Hb_006483_060--Hb_001178_090 Hb_000032_430 Hb_000032_430 Hb_006483_060--Hb_000032_430 Hb_000203_070 Hb_000203_070 Hb_006483_060--Hb_000203_070 Hb_006831_080 Hb_006831_080 Hb_006483_060--Hb_006831_080 Hb_012727_010 Hb_012727_010 Hb_003647_040--Hb_012727_010 Hb_001491_040 Hb_001491_040 Hb_003647_040--Hb_001491_040 Hb_002119_040 Hb_002119_040 Hb_003647_040--Hb_002119_040 Hb_003647_040--Hb_000032_430 Hb_000866_320 Hb_000866_320 Hb_003647_040--Hb_000866_320 Hb_000189_070 Hb_000189_070 Hb_003647_040--Hb_000189_070 Hb_034507_060 Hb_034507_060 Hb_023226_030--Hb_034507_060 Hb_003430_080 Hb_003430_080 Hb_023226_030--Hb_003430_080 Hb_172706_020 Hb_172706_020 Hb_023226_030--Hb_172706_020 Hb_005694_180 Hb_005694_180 Hb_023226_030--Hb_005694_180 Hb_000309_030 Hb_000309_030 Hb_023226_030--Hb_000309_030 Hb_001195_420 Hb_001195_420 Hb_023226_030--Hb_001195_420 Hb_179960_010 Hb_179960_010 Hb_001178_090--Hb_179960_010 Hb_001178_090--Hb_000032_430 Hb_001178_090--Hb_000203_070 Hb_012395_050 Hb_012395_050 Hb_001178_090--Hb_012395_050 Hb_003050_100 Hb_003050_100 Hb_001178_090--Hb_003050_100 Hb_002592_050 Hb_002592_050 Hb_001178_090--Hb_002592_050 Hb_160405_010 Hb_160405_010 Hb_000032_430--Hb_160405_010 Hb_002749_040 Hb_002749_040 Hb_000032_430--Hb_002749_040 Hb_002539_050 Hb_002539_050 Hb_000032_430--Hb_002539_050 Hb_000032_430--Hb_003050_100 Hb_000776_040 Hb_000776_040 Hb_000203_070--Hb_000776_040 Hb_000203_070--Hb_034507_060 Hb_005333_080 Hb_005333_080 Hb_000203_070--Hb_005333_080 Hb_000085_380 Hb_000085_380 Hb_000203_070--Hb_000085_380 Hb_012760_090 Hb_012760_090 Hb_000203_070--Hb_012760_090 Hb_001596_020 Hb_001596_020 Hb_006831_080--Hb_001596_020 Hb_001856_170 Hb_001856_170 Hb_006831_080--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_006831_080--Hb_000120_310 Hb_004586_240 Hb_004586_240 Hb_006831_080--Hb_004586_240 Hb_001141_230 Hb_001141_230 Hb_006831_080--Hb_001141_230 Hb_001832_210 Hb_001832_210 Hb_006831_080--Hb_001832_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.11 42.5931 56.4999 118.556 2.47081 2.8111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7001 2.17014 2.37914 47.2449 11.6011

CAGE analysis