Hb_006487_040

Information

Type -
Description -
Location Contig6487: 27190-28394
Sequence    

Annotation

kegg
ID pmum:103326504
description putative ribonuclease H protein At1g65750
nr
ID XP_008226959.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5Y7A3
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022052mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006487_040 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
2 Hb_003992_050 0.1582013588 - - delta 9 desaturase, putative [Ricinus communis]
3 Hb_027654_070 0.1762851139 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003786_080 0.1792023878 - - electron transporter, putative [Ricinus communis]
5 Hb_002986_140 0.1890423159 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
6 Hb_002999_030 0.2064432009 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
7 Hb_000035_210 0.2084979943 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
8 Hb_002540_060 0.2086790744 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
9 Hb_001999_260 0.2142907662 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
10 Hb_000028_150 0.2181878285 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
11 Hb_000768_120 0.2190886675 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
12 Hb_004208_090 0.219478117 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_000977_170 0.21982744 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_004117_150 0.2228259421 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
15 Hb_001638_310 0.2232308771 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
16 Hb_001975_050 0.2260387803 - - Tyrosine-specific transport protein, putative [Ricinus communis]
17 Hb_000637_070 0.2266040574 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
18 Hb_002435_090 0.2305028663 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
19 Hb_000207_140 0.2326148296 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
20 Hb_003121_010 0.2350080369 - - hypothetical protein POPTR_0018s09720g [Populus trichocarpa]

Gene co-expression network

sample Hb_006487_040 Hb_006487_040 Hb_003992_050 Hb_003992_050 Hb_006487_040--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_006487_040--Hb_027654_070 Hb_003786_080 Hb_003786_080 Hb_006487_040--Hb_003786_080 Hb_002986_140 Hb_002986_140 Hb_006487_040--Hb_002986_140 Hb_002999_030 Hb_002999_030 Hb_006487_040--Hb_002999_030 Hb_000035_210 Hb_000035_210 Hb_006487_040--Hb_000035_210 Hb_002435_090 Hb_002435_090 Hb_003992_050--Hb_002435_090 Hb_000207_140 Hb_000207_140 Hb_003992_050--Hb_000207_140 Hb_001975_050 Hb_001975_050 Hb_003992_050--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_003992_050--Hb_140360_010 Hb_188739_010 Hb_188739_010 Hb_003992_050--Hb_188739_010 Hb_001386_090 Hb_001386_090 Hb_003992_050--Hb_001386_090 Hb_027654_070--Hb_001975_050 Hb_027654_070--Hb_003992_050 Hb_001343_120 Hb_001343_120 Hb_027654_070--Hb_001343_120 Hb_027654_070--Hb_000207_140 Hb_002540_060 Hb_002540_060 Hb_027654_070--Hb_002540_060 Hb_027654_070--Hb_002435_090 Hb_003786_080--Hb_000035_210 Hb_001638_310 Hb_001638_310 Hb_003786_080--Hb_001638_310 Hb_000438_130 Hb_000438_130 Hb_003786_080--Hb_000438_130 Hb_000977_170 Hb_000977_170 Hb_003786_080--Hb_000977_170 Hb_000802_050 Hb_000802_050 Hb_003786_080--Hb_000802_050 Hb_000028_150 Hb_000028_150 Hb_002986_140--Hb_000028_150 Hb_002942_120 Hb_002942_120 Hb_002986_140--Hb_002942_120 Hb_003638_040 Hb_003638_040 Hb_002986_140--Hb_003638_040 Hb_002986_140--Hb_001343_120 Hb_002986_140--Hb_003992_050 Hb_000169_070 Hb_000169_070 Hb_002986_140--Hb_000169_070 Hb_001488_290 Hb_001488_290 Hb_002999_030--Hb_001488_290 Hb_001689_050 Hb_001689_050 Hb_002999_030--Hb_001689_050 Hb_000086_180 Hb_000086_180 Hb_002999_030--Hb_000086_180 Hb_004052_070 Hb_004052_070 Hb_002999_030--Hb_004052_070 Hb_003683_030 Hb_003683_030 Hb_002999_030--Hb_003683_030 Hb_000749_200 Hb_000749_200 Hb_002999_030--Hb_000749_200 Hb_000094_100 Hb_000094_100 Hb_000035_210--Hb_000094_100 Hb_000009_020 Hb_000009_020 Hb_000035_210--Hb_000009_020 Hb_000056_310 Hb_000056_310 Hb_000035_210--Hb_000056_310 Hb_001953_100 Hb_001953_100 Hb_000035_210--Hb_001953_100 Hb_002044_020 Hb_002044_020 Hb_000035_210--Hb_002044_020 Hb_004837_210 Hb_004837_210 Hb_000035_210--Hb_004837_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0238231 0.0397669 0.587192 0.0799465 0.0909058 0.0268765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0787444 0.0173014 0.262462

CAGE analysis