Hb_006487_050

Information

Type -
Description -
Location Contig6487: 28999-32223
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G049600g
description hypothetical protein
nr
ID XP_007149194.1
description hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
swissprot
ID Q9VUQ8
description DCN1-like protein OS=Drosophila melanogaster GN=CG7427 PE=2 SV=2
trembl
ID V7BVX9
description Defective in cullin neddylation protein OS=Phaseolus vulgaris GN=PHAVU_005G049600g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52458: 28869-55013 , PASA_asmbl_52459: 29905-30133 , PASA_asmbl_52460: 29351-29752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006487_050 0.0 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
2 Hb_000364_010 0.0847973544 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
3 Hb_000069_160 0.1012599933 - - -
4 Hb_137403_010 0.1117742449 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
5 Hb_000620_080 0.1213360585 - - hypothetical protein F775_32679 [Aegilops tauschii]
6 Hb_000606_080 0.12236496 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
7 Hb_002217_310 0.1235118677 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
8 Hb_006487_060 0.1241681814 - - Defective in cullin neddylation protein, putative [Ricinus communis]
9 Hb_003502_080 0.1253924016 - - vacuolar protein sorting, putative [Ricinus communis]
10 Hb_002982_040 0.1269826613 - - mta/sah nucleosidase, putative [Ricinus communis]
11 Hb_050455_010 0.1272817701 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
12 Hb_004143_110 0.1294799935 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
13 Hb_000031_030 0.130011072 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
14 Hb_000204_040 0.131422398 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
15 Hb_003656_140 0.1330219159 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
16 Hb_008511_050 0.133363436 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
17 Hb_001124_210 0.1335986236 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001377_180 0.134115207 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
19 Hb_141131_010 0.1360857214 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
20 Hb_002023_020 0.1364689406 - - PREDICTED: aladin isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006487_050 Hb_006487_050 Hb_000364_010 Hb_000364_010 Hb_006487_050--Hb_000364_010 Hb_000069_160 Hb_000069_160 Hb_006487_050--Hb_000069_160 Hb_137403_010 Hb_137403_010 Hb_006487_050--Hb_137403_010 Hb_000620_080 Hb_000620_080 Hb_006487_050--Hb_000620_080 Hb_000606_080 Hb_000606_080 Hb_006487_050--Hb_000606_080 Hb_002217_310 Hb_002217_310 Hb_006487_050--Hb_002217_310 Hb_000204_040 Hb_000204_040 Hb_000364_010--Hb_000204_040 Hb_000364_010--Hb_000620_080 Hb_000031_030 Hb_000031_030 Hb_000364_010--Hb_000031_030 Hb_141131_010 Hb_141131_010 Hb_000364_010--Hb_141131_010 Hb_006816_390 Hb_006816_390 Hb_000364_010--Hb_006816_390 Hb_050455_010 Hb_050455_010 Hb_000069_160--Hb_050455_010 Hb_000069_160--Hb_002217_310 Hb_002982_040 Hb_002982_040 Hb_000069_160--Hb_002982_040 Hb_003847_080 Hb_003847_080 Hb_000069_160--Hb_003847_080 Hb_000849_070 Hb_000849_070 Hb_000069_160--Hb_000849_070 Hb_003502_080 Hb_003502_080 Hb_000069_160--Hb_003502_080 Hb_003656_140 Hb_003656_140 Hb_137403_010--Hb_003656_140 Hb_002023_020 Hb_002023_020 Hb_137403_010--Hb_002023_020 Hb_137403_010--Hb_002982_040 Hb_000364_150 Hb_000364_150 Hb_137403_010--Hb_000364_150 Hb_005862_010 Hb_005862_010 Hb_137403_010--Hb_005862_010 Hb_150360_010 Hb_150360_010 Hb_137403_010--Hb_150360_010 Hb_000620_080--Hb_141131_010 Hb_004128_190 Hb_004128_190 Hb_000620_080--Hb_004128_190 Hb_001454_140 Hb_001454_140 Hb_000620_080--Hb_001454_140 Hb_004374_200 Hb_004374_200 Hb_000620_080--Hb_004374_200 Hb_001124_210 Hb_001124_210 Hb_000620_080--Hb_001124_210 Hb_000771_100 Hb_000771_100 Hb_000620_080--Hb_000771_100 Hb_002067_120 Hb_002067_120 Hb_000606_080--Hb_002067_120 Hb_041392_010 Hb_041392_010 Hb_000606_080--Hb_041392_010 Hb_000606_080--Hb_003502_080 Hb_000197_210 Hb_000197_210 Hb_000606_080--Hb_000197_210 Hb_000679_150 Hb_000679_150 Hb_000606_080--Hb_000679_150 Hb_006951_020 Hb_006951_020 Hb_000606_080--Hb_006951_020 Hb_002217_310--Hb_141131_010 Hb_002217_310--Hb_000849_070 Hb_002217_310--Hb_001124_210 Hb_021409_020 Hb_021409_020 Hb_002217_310--Hb_021409_020 Hb_002217_310--Hb_003847_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8855 8.15203 4.58349 25.1474 18.0801 47.9227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.002 14.5735 15.4081 5.64118 5.18603

CAGE analysis