Hb_006487_060

Information

Type -
Description -
Location Contig6487: 47994-55378
Sequence    

Annotation

kegg
ID rcu:RCOM_1130690
description Defective in cullin neddylation protein, putative
nr
ID XP_002518833.1
description Defective in cullin neddylation protein, putative [Ricinus communis]
swissprot
ID Q8BZJ7
description DCN1-like protein 2 OS=Mus musculus GN=Dcun1d2 PE=2 SV=3
trembl
ID B9RYL4
description Defective in cullin neddylation protein OS=Ricinus communis GN=RCOM_1130690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52458: 28869-55013 , PASA_asmbl_52462: 40359-48964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006487_060 0.0 - - Defective in cullin neddylation protein, putative [Ricinus communis]
2 Hb_152554_010 0.106829017 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
3 Hb_007763_060 0.115200614 - - BnaA02g23510D [Brassica napus]
4 Hb_000176_120 0.1167314003 - - seryl-tRNA synthetase, putative [Ricinus communis]
5 Hb_006663_090 0.1241632945 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
6 Hb_006487_050 0.1241681814 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
7 Hb_000825_030 0.12859841 - - zinc binding dehydrogenase, putative [Ricinus communis]
8 Hb_001377_180 0.1350619559 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
9 Hb_136731_010 0.135707705 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
10 Hb_000608_180 0.1379896799 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
11 Hb_006252_010 0.1424023978 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
12 Hb_005085_030 0.142692982 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
13 Hb_010504_030 0.1443502848 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
14 Hb_166480_010 0.1457524874 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
15 Hb_002482_060 0.1457872048 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
16 Hb_007188_020 0.1531042165 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
17 Hb_001386_140 0.1572175954 - - PREDICTED: B2 protein [Jatropha curcas]
18 Hb_106005_010 0.1588318705 - - EG5651 [Manihot esculenta]
19 Hb_003994_270 0.1591518553 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
20 Hb_002783_060 0.1618316273 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]

Gene co-expression network

sample Hb_006487_060 Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_006487_060--Hb_152554_010 Hb_007763_060 Hb_007763_060 Hb_006487_060--Hb_007763_060 Hb_000176_120 Hb_000176_120 Hb_006487_060--Hb_000176_120 Hb_006663_090 Hb_006663_090 Hb_006487_060--Hb_006663_090 Hb_006487_050 Hb_006487_050 Hb_006487_060--Hb_006487_050 Hb_000825_030 Hb_000825_030 Hb_006487_060--Hb_000825_030 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_000812_040 Hb_000812_040 Hb_152554_010--Hb_000812_040 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_152554_010--Hb_000176_120 Hb_008096_030 Hb_008096_030 Hb_007763_060--Hb_008096_030 Hb_007763_060--Hb_152554_010 Hb_028420_020 Hb_028420_020 Hb_007763_060--Hb_028420_020 Hb_168973_010 Hb_168973_010 Hb_007763_060--Hb_168973_010 Hb_002482_060 Hb_002482_060 Hb_007763_060--Hb_002482_060 Hb_005054_070 Hb_005054_070 Hb_000176_120--Hb_005054_070 Hb_000001_040 Hb_000001_040 Hb_000176_120--Hb_000001_040 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_136731_010 Hb_136731_010 Hb_000176_120--Hb_136731_010 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_068014_010 Hb_068014_010 Hb_006663_090--Hb_068014_010 Hb_005679_070 Hb_005679_070 Hb_006663_090--Hb_005679_070 Hb_000364_010 Hb_000364_010 Hb_006487_050--Hb_000364_010 Hb_000069_160 Hb_000069_160 Hb_006487_050--Hb_000069_160 Hb_137403_010 Hb_137403_010 Hb_006487_050--Hb_137403_010 Hb_000620_080 Hb_000620_080 Hb_006487_050--Hb_000620_080 Hb_000606_080 Hb_000606_080 Hb_006487_050--Hb_000606_080 Hb_002217_310 Hb_002217_310 Hb_006487_050--Hb_002217_310 Hb_038237_010 Hb_038237_010 Hb_000825_030--Hb_038237_010 Hb_106415_010 Hb_106415_010 Hb_000825_030--Hb_106415_010 Hb_000991_070 Hb_000991_070 Hb_000825_030--Hb_000991_070 Hb_000825_030--Hb_152554_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0535 15.8957 10.8296 105.282 37.9831 207.373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.194 50.9031 46.3468 20.1372 14.6141

CAGE analysis