Hb_006499_010

Information

Type -
Description -
Location Contig6499: 1584-3068
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006499_010 0.0 - - -
2 Hb_001930_070 0.0536809697 - - -
3 Hb_000163_290 0.0745457512 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
4 Hb_007245_090 0.0918135213 - - -
5 Hb_000033_050 0.0926489511 - - -
6 Hb_001186_060 0.0999927399 - - -
7 Hb_003747_240 0.103881486 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
8 Hb_000014_100 0.1043598664 - - -
9 Hb_000371_110 0.1046039542 - - -
10 Hb_000567_200 0.1167532639 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
11 Hb_000117_040 0.1170673612 - - 30S ribosomal protein S6A [Hevea brasiliensis]
12 Hb_001514_190 0.121459216 - - -
13 Hb_011716_040 0.1217761144 - - -
14 Hb_000809_040 0.1294078844 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
15 Hb_001518_020 0.1339547908 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
16 Hb_002924_050 0.1355462008 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
17 Hb_005214_110 0.1371921439 - - -
18 Hb_010098_080 0.1372352001 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
19 Hb_004882_020 0.1380131213 - - -
20 Hb_000472_040 0.1406454095 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]

Gene co-expression network

sample Hb_006499_010 Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_006499_010--Hb_001930_070 Hb_000163_290 Hb_000163_290 Hb_006499_010--Hb_000163_290 Hb_007245_090 Hb_007245_090 Hb_006499_010--Hb_007245_090 Hb_000033_050 Hb_000033_050 Hb_006499_010--Hb_000033_050 Hb_001186_060 Hb_001186_060 Hb_006499_010--Hb_001186_060 Hb_003747_240 Hb_003747_240 Hb_006499_010--Hb_003747_240 Hb_001930_070--Hb_001186_060 Hb_001930_070--Hb_007245_090 Hb_001930_070--Hb_000033_050 Hb_000014_100 Hb_000014_100 Hb_001930_070--Hb_000014_100 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050 Hb_000117_040 Hb_000117_040 Hb_000163_290--Hb_000117_040 Hb_001518_020 Hb_001518_020 Hb_000163_290--Hb_001518_020 Hb_000163_290--Hb_003747_240 Hb_000371_110 Hb_000371_110 Hb_000163_290--Hb_000371_110 Hb_000163_290--Hb_001186_060 Hb_007245_090--Hb_000014_100 Hb_005214_110 Hb_005214_110 Hb_007245_090--Hb_005214_110 Hb_004882_020 Hb_004882_020 Hb_007245_090--Hb_004882_020 Hb_000339_070 Hb_000339_070 Hb_007245_090--Hb_000339_070 Hb_000033_050--Hb_000163_290 Hb_000033_050--Hb_001186_060 Hb_011716_040 Hb_011716_040 Hb_000033_050--Hb_011716_040 Hb_000033_050--Hb_000371_110 Hb_001186_060--Hb_000371_110 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_000809_040 Hb_000809_040 Hb_003747_240--Hb_000809_040 Hb_011174_070 Hb_011174_070 Hb_003747_240--Hb_011174_070 Hb_000138_040 Hb_000138_040 Hb_003747_240--Hb_000138_040 Hb_003404_030 Hb_003404_030 Hb_003747_240--Hb_003404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
331.178 69.7494 3.43362 1.34422 246.435 148.585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
200.011 164.352 217.64 50.2005 3.81873

CAGE analysis