Hb_006499_020

Information

Type -
Description -
Location Contig6499: 33893-37618
Sequence    

Annotation

kegg
ID rcu:RCOM_0586540
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012078599.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9SAG6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_0586540 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006499_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
2 Hb_168561_010 0.0502611945 - - PREDICTED: notchless protein homolog [Jatropha curcas]
3 Hb_116190_010 0.083968087 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
4 Hb_000226_110 0.0932246429 - - -
5 Hb_003861_090 0.0951026977 - - adenylsulfate kinase, putative [Ricinus communis]
6 Hb_000373_060 0.1100068668 - - PREDICTED: extensin-3 [Camelina sativa]
7 Hb_000639_010 0.1184922748 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
8 Hb_003858_080 0.1271436801 - - Germin-like protein 2 [Theobroma cacao]
9 Hb_004162_140 0.1315616195 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
10 Hb_001675_040 0.1357531445 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001369_270 0.1489423497 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_010334_050 0.1495891896 - - conserved hypothetical protein [Ricinus communis]
13 Hb_060152_010 0.1518249253 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
14 Hb_007101_140 0.154829751 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
15 Hb_000337_030 0.155801347 - - amino acid transporter, putative [Ricinus communis]
16 Hb_002783_180 0.1595250996 - - Tubulin beta-6 chain [Gossypium arboreum]
17 Hb_000668_050 0.161551855 - - phosphoglycerate mutase, putative [Ricinus communis]
18 Hb_006142_050 0.1636091036 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
19 Hb_026419_010 0.1649133276 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
20 Hb_003124_050 0.167224761 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]

Gene co-expression network

sample Hb_006499_020 Hb_006499_020 Hb_168561_010 Hb_168561_010 Hb_006499_020--Hb_168561_010 Hb_116190_010 Hb_116190_010 Hb_006499_020--Hb_116190_010 Hb_000226_110 Hb_000226_110 Hb_006499_020--Hb_000226_110 Hb_003861_090 Hb_003861_090 Hb_006499_020--Hb_003861_090 Hb_000373_060 Hb_000373_060 Hb_006499_020--Hb_000373_060 Hb_000639_010 Hb_000639_010 Hb_006499_020--Hb_000639_010 Hb_168561_010--Hb_000639_010 Hb_004162_140 Hb_004162_140 Hb_168561_010--Hb_004162_140 Hb_168561_010--Hb_116190_010 Hb_000635_100 Hb_000635_100 Hb_168561_010--Hb_000635_100 Hb_007101_140 Hb_007101_140 Hb_168561_010--Hb_007101_140 Hb_116190_010--Hb_000373_060 Hb_116190_010--Hb_003861_090 Hb_010334_050 Hb_010334_050 Hb_116190_010--Hb_010334_050 Hb_116190_010--Hb_000226_110 Hb_026419_010 Hb_026419_010 Hb_000226_110--Hb_026419_010 Hb_001369_270 Hb_001369_270 Hb_000226_110--Hb_001369_270 Hb_000226_110--Hb_003861_090 Hb_000226_110--Hb_000373_060 Hb_003861_090--Hb_000373_060 Hb_003858_080 Hb_003858_080 Hb_003861_090--Hb_003858_080 Hb_003861_090--Hb_010334_050 Hb_000373_060--Hb_010334_050 Hb_000645_250 Hb_000645_250 Hb_000373_060--Hb_000645_250 Hb_000639_010--Hb_000635_100 Hb_001277_010 Hb_001277_010 Hb_000639_010--Hb_001277_010 Hb_000639_010--Hb_007101_140 Hb_032572_010 Hb_032572_010 Hb_000639_010--Hb_032572_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0443877 0.0802065 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0700917 0.0719963

CAGE analysis