Hb_006501_020

Information

Type -
Description -
Location Contig6501: 30554-32452
Sequence    

Annotation

kegg
ID csv:101211333
description SNW domain-containing protein 1-like
nr
ID XP_012088232.1
description PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
swissprot
ID O80653
description SNW/SKI-interacting protein OS=Arabidopsis thaliana GN=SKIP PE=1 SV=1
trembl
ID A0A067JJL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25749 PE=4 SV=1
Gene Ontology
ID GO:0005681
description snw ski-interacting

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_020 0.0 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
2 Hb_000640_200 0.0672455699 - - hypothetical protein RCOM_1346600 [Ricinus communis]
3 Hb_006588_050 0.0823406626 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
4 Hb_003157_010 0.0846301457 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
5 Hb_031069_020 0.087741888 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
6 Hb_007904_180 0.0905713547 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
7 Hb_004899_070 0.0915648782 - - PREDICTED: RRP12-like protein [Jatropha curcas]
8 Hb_057451_010 0.1003925961 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
9 Hb_001301_230 0.1008971245 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
10 Hb_006816_410 0.1021670217 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
11 Hb_000261_290 0.1043749847 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
12 Hb_003866_020 0.10495251 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000023_060 0.1060149061 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
14 Hb_006816_300 0.1066692746 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
15 Hb_000808_070 0.1088176857 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
16 Hb_004037_030 0.1089361874 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
17 Hb_003157_030 0.1101243397 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
18 Hb_000098_130 0.1105787794 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
19 Hb_000813_100 0.1112271894 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
20 Hb_141547_010 0.1127608763 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]

Gene co-expression network

sample Hb_006501_020 Hb_006501_020 Hb_000640_200 Hb_000640_200 Hb_006501_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_006501_020--Hb_006588_050 Hb_003157_010 Hb_003157_010 Hb_006501_020--Hb_003157_010 Hb_031069_020 Hb_031069_020 Hb_006501_020--Hb_031069_020 Hb_007904_180 Hb_007904_180 Hb_006501_020--Hb_007904_180 Hb_004899_070 Hb_004899_070 Hb_006501_020--Hb_004899_070 Hb_000640_200--Hb_004899_070 Hb_057451_010 Hb_057451_010 Hb_000640_200--Hb_057451_010 Hb_000640_200--Hb_006588_050 Hb_000813_100 Hb_000813_100 Hb_000640_200--Hb_000813_100 Hb_000640_200--Hb_031069_020 Hb_000261_290 Hb_000261_290 Hb_006588_050--Hb_000261_290 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_006588_050--Hb_006816_300 Hb_000120_620 Hb_000120_620 Hb_006588_050--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_006588_050--Hb_003097_180 Hb_003157_010--Hb_057451_010 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_009028_030 Hb_009028_030 Hb_003157_010--Hb_009028_030 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020 Hb_078477_040 Hb_078477_040 Hb_031069_020--Hb_078477_040 Hb_001901_080 Hb_001901_080 Hb_031069_020--Hb_001901_080 Hb_001731_020 Hb_001731_020 Hb_031069_020--Hb_001731_020 Hb_031069_020--Hb_006588_050 Hb_004037_030 Hb_004037_030 Hb_007904_180--Hb_004037_030 Hb_000475_020 Hb_000475_020 Hb_007904_180--Hb_000475_020 Hb_000002_440 Hb_000002_440 Hb_007904_180--Hb_000002_440 Hb_001811_120 Hb_001811_120 Hb_007904_180--Hb_001811_120 Hb_007904_180--Hb_000813_100 Hb_007904_180--Hb_006816_300 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_004899_070--Hb_000261_290 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_004899_070--Hb_000813_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.857 116.332 21.9393 32.6976 107.341 173.761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7246 14.0329 21.0158 54.5922 29.1337

CAGE analysis