Hb_006501_040

Information

Type -
Description -
Location Contig6501: 35694-37121
Sequence    

Annotation

kegg
ID pmum:103333500
description pentatricopeptide repeat-containing protein At1g77170
nr
ID XP_012088411.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
swissprot
ID Q3ECB8
description Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1
trembl
ID A0A067JMN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25750 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at1g77170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
2 Hb_000179_210 0.0682305512 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
3 Hb_000059_220 0.0731645219 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
4 Hb_178968_110 0.0842143507 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
5 Hb_003266_130 0.0906130929 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
6 Hb_000297_200 0.0924469951 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
7 Hb_000457_150 0.09312173 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
8 Hb_003861_080 0.0949119594 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
9 Hb_000614_230 0.0972348603 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
10 Hb_010710_040 0.0977100733 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002686_290 0.0987789031 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
12 Hb_000997_400 0.1009085669 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
13 Hb_000836_070 0.1016774484 - - protein binding protein, putative [Ricinus communis]
14 Hb_001635_100 0.1030092968 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
15 Hb_000110_160 0.1040598178 - - conserved hypothetical protein [Ricinus communis]
16 Hb_163145_020 0.1041441374 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
17 Hb_001157_030 0.1044603884 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
18 Hb_002890_280 0.1060503171 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
19 Hb_000934_270 0.1066621201 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
20 Hb_001085_170 0.1070429529 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006501_040 Hb_006501_040 Hb_000179_210 Hb_000179_210 Hb_006501_040--Hb_000179_210 Hb_000059_220 Hb_000059_220 Hb_006501_040--Hb_000059_220 Hb_178968_110 Hb_178968_110 Hb_006501_040--Hb_178968_110 Hb_003266_130 Hb_003266_130 Hb_006501_040--Hb_003266_130 Hb_000297_200 Hb_000297_200 Hb_006501_040--Hb_000297_200 Hb_000457_150 Hb_000457_150 Hb_006501_040--Hb_000457_150 Hb_000179_210--Hb_178968_110 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000179_210--Hb_000059_220 Hb_000179_210--Hb_000457_150 Hb_003297_030 Hb_003297_030 Hb_000179_210--Hb_003297_030 Hb_000997_400 Hb_000997_400 Hb_000059_220--Hb_000997_400 Hb_000059_220--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_000059_220--Hb_000614_230 Hb_000059_220--Hb_000297_200 Hb_178968_110--Hb_003266_130 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_178968_110--Hb_000457_150 Hb_178968_110--Hb_000614_230 Hb_010172_050 Hb_010172_050 Hb_178968_110--Hb_010172_050 Hb_003266_130--Hb_000614_230 Hb_006816_140 Hb_006816_140 Hb_003266_130--Hb_006816_140 Hb_005488_010 Hb_005488_010 Hb_003266_130--Hb_005488_010 Hb_001158_140 Hb_001158_140 Hb_003266_130--Hb_001158_140 Hb_003266_130--Hb_010172_050 Hb_000297_200--Hb_000997_400 Hb_000297_200--Hb_000457_150 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000935_050 Hb_000935_050 Hb_000297_200--Hb_000935_050 Hb_000007_150 Hb_000007_150 Hb_000297_200--Hb_000007_150 Hb_000457_150--Hb_005532_060 Hb_055062_030 Hb_055062_030 Hb_000457_150--Hb_055062_030 Hb_000457_150--Hb_000997_400 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6056 1.53727 0.197366 0.67208 2.68176 2.92914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38001 3.53669 5.12015 0.986807 0.922906

CAGE analysis