Hb_006501_090

Information

Type -
Description -
Location Contig6501: 59301-68752
Sequence    

Annotation

kegg
ID rcu:RCOM_1050170
description Golgin-84, putative
nr
ID XP_012076781.1
description PREDICTED: golgin candidate 1 [Jatropha curcas]
swissprot
ID Q8S8N9
description Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2
trembl
ID A0A067KFJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07304 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52528: 57929-58926 , PASA_asmbl_52529: 67274-67836 , PASA_asmbl_52531: 67318-67823 , PASA_asmbl_52532: 64548-68652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_090 0.0 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
2 Hb_001655_030 0.0468593786 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
3 Hb_000035_170 0.0532357333 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
4 Hb_109980_010 0.0647448631 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
5 Hb_001518_080 0.0662131423 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
6 Hb_001279_030 0.0663180367 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
7 Hb_000039_150 0.0668150616 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
8 Hb_000214_050 0.0678695123 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
9 Hb_020378_030 0.0718226906 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
10 Hb_053079_020 0.0721881885 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
11 Hb_015807_050 0.0723290711 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
12 Hb_007747_040 0.073304019 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
13 Hb_000441_220 0.073401914 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_002732_040 0.0739370664 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
15 Hb_007426_110 0.0740526902 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
16 Hb_000086_440 0.0742553591 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
17 Hb_002027_080 0.0742691634 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
18 Hb_001268_280 0.0746529175 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002205_250 0.0755917467 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
20 Hb_011231_020 0.0759644721 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006501_090 Hb_006501_090 Hb_001655_030 Hb_001655_030 Hb_006501_090--Hb_001655_030 Hb_000035_170 Hb_000035_170 Hb_006501_090--Hb_000035_170 Hb_109980_010 Hb_109980_010 Hb_006501_090--Hb_109980_010 Hb_001518_080 Hb_001518_080 Hb_006501_090--Hb_001518_080 Hb_001279_030 Hb_001279_030 Hb_006501_090--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_006501_090--Hb_000039_150 Hb_011231_020 Hb_011231_020 Hb_001655_030--Hb_011231_020 Hb_007426_110 Hb_007426_110 Hb_001655_030--Hb_007426_110 Hb_001814_030 Hb_001814_030 Hb_001655_030--Hb_001814_030 Hb_003645_060 Hb_003645_060 Hb_001655_030--Hb_003645_060 Hb_000890_060 Hb_000890_060 Hb_001655_030--Hb_000890_060 Hb_012053_080 Hb_012053_080 Hb_000035_170--Hb_012053_080 Hb_000082_070 Hb_000082_070 Hb_000035_170--Hb_000082_070 Hb_000035_170--Hb_003645_060 Hb_000563_130 Hb_000563_130 Hb_000035_170--Hb_000563_130 Hb_000035_170--Hb_001655_030 Hb_015807_050 Hb_015807_050 Hb_109980_010--Hb_015807_050 Hb_006483_110 Hb_006483_110 Hb_109980_010--Hb_006483_110 Hb_109980_010--Hb_001655_030 Hb_007657_010 Hb_007657_010 Hb_109980_010--Hb_007657_010 Hb_000935_010 Hb_000935_010 Hb_109980_010--Hb_000935_010 Hb_000635_090 Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002027_080 Hb_002027_080 Hb_001518_080--Hb_002027_080 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_001518_080--Hb_015807_050 Hb_011228_010 Hb_011228_010 Hb_001279_030--Hb_011228_010 Hb_005291_050 Hb_005291_050 Hb_001279_030--Hb_005291_050 Hb_000181_240 Hb_000181_240 Hb_001279_030--Hb_000181_240 Hb_001279_030--Hb_000039_150 Hb_001279_030--Hb_015807_050 Hb_008959_010 Hb_008959_010 Hb_000039_150--Hb_008959_010 Hb_000039_150--Hb_011228_010 Hb_002769_030 Hb_002769_030 Hb_000039_150--Hb_002769_030 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.75267 5.34813 6.58371 6.2433 6.23811 7.34108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38906 3.08221 5.78267 5.59266 7.54346

CAGE analysis