Hb_006501_100

Information

Type -
Description -
Location Contig6501: 72101-79972
Sequence    

Annotation

kegg
ID rcu:RCOM_1049930
description malic enzyme, putative (EC:1.1.1.40)
nr
ID XP_002514230.1
description malic enzyme, putative [Ricinus communis]
swissprot
ID P51615
description NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1
trembl
ID B9RKI6
description Malic enzyme OS=Ricinus communis GN=RCOM_1049930 PE=3 SV=1
Gene Ontology
ID GO:0005829
description nadp-dependent malic enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52533: 75580-79960
cDNA
(Sanger)
(ID:Location)		 016_G05.ab1: 75586-76599 , 025_H10.ab1: 75580-77279

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_100 0.0 - - malic enzyme, putative [Ricinus communis]
2 Hb_004282_010 0.0602461751 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
3 Hb_006277_030 0.0783686505 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000956_070 0.0807123283 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
5 Hb_002818_170 0.0810727323 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
6 Hb_000014_080 0.099561901 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
7 Hb_002025_380 0.1024816533 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
8 Hb_000127_080 0.105076379 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
9 Hb_001040_200 0.1080420624 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
10 Hb_001568_010 0.1108769163 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002097_180 0.1146946891 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
12 Hb_007017_100 0.1186668868 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
13 Hb_003189_010 0.1197835726 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
14 Hb_005731_070 0.1202261589 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008727_040 0.120838869 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007875_020 0.1268797551 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
17 Hb_005144_080 0.1288073774 - - Serine carboxypeptidase, putative [Ricinus communis]
18 Hb_009767_050 0.1300996845 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
19 Hb_029510_090 0.1320808958 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
20 Hb_007386_030 0.1371765609 - - PREDICTED: formin-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006501_100 Hb_006501_100 Hb_004282_010 Hb_004282_010 Hb_006501_100--Hb_004282_010 Hb_006277_030 Hb_006277_030 Hb_006501_100--Hb_006277_030 Hb_000956_070 Hb_000956_070 Hb_006501_100--Hb_000956_070 Hb_002818_170 Hb_002818_170 Hb_006501_100--Hb_002818_170 Hb_000014_080 Hb_000014_080 Hb_006501_100--Hb_000014_080 Hb_002025_380 Hb_002025_380 Hb_006501_100--Hb_002025_380 Hb_004282_010--Hb_000956_070 Hb_004282_010--Hb_000014_080 Hb_008727_040 Hb_008727_040 Hb_004282_010--Hb_008727_040 Hb_001568_010 Hb_001568_010 Hb_004282_010--Hb_001568_010 Hb_004282_010--Hb_006277_030 Hb_006277_030--Hb_002818_170 Hb_006277_030--Hb_002025_380 Hb_003189_010 Hb_003189_010 Hb_006277_030--Hb_003189_010 Hb_005144_080 Hb_005144_080 Hb_006277_030--Hb_005144_080 Hb_000956_070--Hb_000014_080 Hb_000956_070--Hb_008727_040 Hb_000127_080 Hb_000127_080 Hb_000956_070--Hb_000127_080 Hb_000956_070--Hb_002818_170 Hb_002818_170--Hb_003189_010 Hb_002097_180 Hb_002097_180 Hb_002818_170--Hb_002097_180 Hb_002818_170--Hb_002025_380 Hb_002818_170--Hb_004282_010 Hb_000014_080--Hb_001568_010 Hb_005731_070 Hb_005731_070 Hb_000014_080--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_000014_080--Hb_007386_030 Hb_002025_380--Hb_003189_010 Hb_002025_380--Hb_002097_180 Hb_002025_380--Hb_005144_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.990731 14.3198 55.2892 158.008 0.511218 0.698921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.56144 0.294487 0.238262 141.88 51.3153

CAGE analysis