Hb_006501_130

Information

Type -
Description -
Location Contig6501: 122017-123652
Sequence    

Annotation

kegg
ID rcu:RCOM_1049670
description hypothetical protein
nr
ID XP_002514224.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L4D8
description Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
trembl
ID B9RKI0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52539: 122480-123447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001519_090 0.1064659375 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
3 Hb_002042_180 0.1137640057 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
4 Hb_003207_120 0.1161165239 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
5 Hb_001258_130 0.1197153649 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
6 Hb_005276_140 0.1288294804 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011671_050 0.1297494332 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
8 Hb_006620_030 0.1311637423 - - nitrate reductase, putative [Ricinus communis]
9 Hb_105148_020 0.1334896139 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
10 Hb_023582_010 0.1339881953 - - conserved hypothetical protein [Ricinus communis]
11 Hb_016297_010 0.1340282604 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
12 Hb_000331_170 0.1357229901 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
13 Hb_001511_210 0.1370580733 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
14 Hb_004102_060 0.1370829992 - - JHL25H03.11 [Jatropha curcas]
15 Hb_004308_030 0.1376350285 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_011310_170 0.1378438134 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_002066_100 0.1384041104 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
18 Hb_129956_010 0.1387820752 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
19 Hb_005977_080 0.1388861235 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
20 Hb_002499_050 0.1395617452 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006501_130 Hb_006501_130 Hb_001519_090 Hb_001519_090 Hb_006501_130--Hb_001519_090 Hb_002042_180 Hb_002042_180 Hb_006501_130--Hb_002042_180 Hb_003207_120 Hb_003207_120 Hb_006501_130--Hb_003207_120 Hb_001258_130 Hb_001258_130 Hb_006501_130--Hb_001258_130 Hb_005276_140 Hb_005276_140 Hb_006501_130--Hb_005276_140 Hb_011671_050 Hb_011671_050 Hb_006501_130--Hb_011671_050 Hb_000312_100 Hb_000312_100 Hb_001519_090--Hb_000312_100 Hb_001519_090--Hb_003207_120 Hb_129956_010 Hb_129956_010 Hb_001519_090--Hb_129956_010 Hb_001519_090--Hb_005276_140 Hb_000139_040 Hb_000139_040 Hb_001519_090--Hb_000139_040 Hb_029695_090 Hb_029695_090 Hb_001519_090--Hb_029695_090 Hb_000722_030 Hb_000722_030 Hb_002042_180--Hb_000722_030 Hb_001148_110 Hb_001148_110 Hb_002042_180--Hb_001148_110 Hb_027684_010 Hb_027684_010 Hb_002042_180--Hb_027684_010 Hb_023582_010 Hb_023582_010 Hb_002042_180--Hb_023582_010 Hb_004102_060 Hb_004102_060 Hb_002042_180--Hb_004102_060 Hb_002518_040 Hb_002518_040 Hb_002042_180--Hb_002518_040 Hb_004202_030 Hb_004202_030 Hb_003207_120--Hb_004202_030 Hb_003207_120--Hb_002518_040 Hb_005977_080 Hb_005977_080 Hb_003207_120--Hb_005977_080 Hb_004137_110 Hb_004137_110 Hb_003207_120--Hb_004137_110 Hb_000086_470 Hb_000086_470 Hb_003207_120--Hb_000086_470 Hb_001511_210 Hb_001511_210 Hb_001258_130--Hb_001511_210 Hb_016297_010 Hb_016297_010 Hb_001258_130--Hb_016297_010 Hb_105148_020 Hb_105148_020 Hb_001258_130--Hb_105148_020 Hb_001258_130--Hb_000139_040 Hb_002066_100 Hb_002066_100 Hb_001258_130--Hb_002066_100 Hb_001258_130--Hb_000722_030 Hb_000331_170 Hb_000331_170 Hb_005276_140--Hb_000331_170 Hb_132840_190 Hb_132840_190 Hb_005276_140--Hb_132840_190 Hb_000058_180 Hb_000058_180 Hb_005276_140--Hb_000058_180 Hb_005276_140--Hb_000312_100 Hb_007221_020 Hb_007221_020 Hb_005276_140--Hb_007221_020 Hb_000120_340 Hb_000120_340 Hb_011671_050--Hb_000120_340 Hb_011671_050--Hb_002518_040 Hb_001439_050 Hb_001439_050 Hb_011671_050--Hb_001439_050 Hb_011671_050--Hb_001511_210 Hb_003666_070 Hb_003666_070 Hb_011671_050--Hb_003666_070 Hb_007632_160 Hb_007632_160 Hb_011671_050--Hb_007632_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.224974 3.31668 1.56747 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.148918 0.0292868 0 0.0468679 1.33858

CAGE analysis