Hb_006501_140

Information

Type -
Description -
Location Contig6501: 144921-146525
Sequence    

Annotation

kegg
ID rcu:RCOM_1049660
description multidrug resistance pump, putative
nr
ID XP_012076879.1
description PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
swissprot
ID Q5I0E9
description Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1
trembl
ID A0A067KFP8
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_07374 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_140 0.0 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
2 Hb_000805_220 0.1072804588 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_100526_020 0.17082294 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
4 Hb_000930_020 0.1717866513 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
5 Hb_105814_020 0.1749721487 - - berberine bridge enzyme [Hevea brasiliensis]
6 Hb_003145_030 0.1752637043 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000974_030 0.1826234446 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
8 Hb_009403_010 0.1935574168 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
9 Hb_007137_020 0.1994423576 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_004730_010 0.2015157713 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
11 Hb_000096_050 0.2051986423 - - conserved hypothetical protein [Ricinus communis]
12 Hb_137338_010 0.2078908725 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_001379_080 0.2136784637 - - PREDICTED: WAT1-related protein At5g07050-like [Vitis vinifera]
14 Hb_002060_070 0.2146253535 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
15 Hb_000041_160 0.2160734834 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
16 Hb_009492_020 0.2178694726 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_001814_100 0.2185909187 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
18 Hb_001295_050 0.2197194995 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
19 Hb_034953_010 0.2206879433 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
20 Hb_123078_010 0.2254009688 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]

Gene co-expression network

sample Hb_006501_140 Hb_006501_140 Hb_000805_220 Hb_000805_220 Hb_006501_140--Hb_000805_220 Hb_100526_020 Hb_100526_020 Hb_006501_140--Hb_100526_020 Hb_000930_020 Hb_000930_020 Hb_006501_140--Hb_000930_020 Hb_105814_020 Hb_105814_020 Hb_006501_140--Hb_105814_020 Hb_003145_030 Hb_003145_030 Hb_006501_140--Hb_003145_030 Hb_000974_030 Hb_000974_030 Hb_006501_140--Hb_000974_030 Hb_009492_020 Hb_009492_020 Hb_000805_220--Hb_009492_020 Hb_000805_220--Hb_000930_020 Hb_002060_070 Hb_002060_070 Hb_000805_220--Hb_002060_070 Hb_000805_220--Hb_100526_020 Hb_000096_050 Hb_000096_050 Hb_000805_220--Hb_000096_050 Hb_100526_020--Hb_000096_050 Hb_100526_020--Hb_000974_030 Hb_100526_020--Hb_000930_020 Hb_001379_080 Hb_001379_080 Hb_100526_020--Hb_001379_080 Hb_000984_110 Hb_000984_110 Hb_100526_020--Hb_000984_110 Hb_000930_020--Hb_000096_050 Hb_000930_020--Hb_002060_070 Hb_000930_020--Hb_009492_020 Hb_000930_020--Hb_000974_030 Hb_123078_010 Hb_123078_010 Hb_105814_020--Hb_123078_010 Hb_000041_160 Hb_000041_160 Hb_105814_020--Hb_000041_160 Hb_004730_010 Hb_004730_010 Hb_105814_020--Hb_004730_010 Hb_027474_010 Hb_027474_010 Hb_105814_020--Hb_027474_010 Hb_002267_030 Hb_002267_030 Hb_105814_020--Hb_002267_030 Hb_009403_010 Hb_009403_010 Hb_105814_020--Hb_009403_010 Hb_003145_030--Hb_000974_030 Hb_005048_090 Hb_005048_090 Hb_003145_030--Hb_005048_090 Hb_001295_050 Hb_001295_050 Hb_003145_030--Hb_001295_050 Hb_000230_550 Hb_000230_550 Hb_003145_030--Hb_000230_550 Hb_000181_390 Hb_000181_390 Hb_003145_030--Hb_000181_390 Hb_010267_030 Hb_010267_030 Hb_003145_030--Hb_010267_030 Hb_000974_030--Hb_005048_090 Hb_000974_030--Hb_000096_050 Hb_000974_030--Hb_000181_390 Hb_000974_030--Hb_009403_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0988651 0 0.0554876 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0476968

CAGE analysis