Hb_006501_150

Information

Type -
Description -
Location Contig6501: 151741-153152
Sequence    

Annotation

kegg
ID rcu:RCOM_1049650
description hypothetical protein
nr
ID XP_002514222.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKH8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52540: 151951-153095 , PASA_asmbl_52541: 151951-153095 , PASA_asmbl_52542: 152937-155722
cDNA
(Sanger)
(ID:Location)		 019_B09.ab1: 151951-153095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_143766_090 0.0668713761 - - 60S ribosomal protein L31B [Hevea brasiliensis]
3 Hb_001514_020 0.083366121 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
4 Hb_005333_040 0.0881559002 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
5 Hb_004502_030 0.0902455491 - - unknown [Populus trichocarpa]
6 Hb_033080_010 0.0920753801 - - -
7 Hb_000183_070 0.0958889035 - - -
8 Hb_000270_840 0.0975221527 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
9 Hb_004096_170 0.0991057406 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
10 Hb_000270_360 0.1000881061 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
11 Hb_001437_300 0.1005926389 - - -
12 Hb_012675_090 0.1024162008 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
13 Hb_004046_040 0.1027876224 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
14 Hb_004204_030 0.1035432645 - - unknown [Populus trichocarpa]
15 Hb_000847_070 0.1076180411 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
16 Hb_052135_030 0.1077305364 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_007992_030 0.1082953153 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
18 Hb_000538_020 0.1090856202 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
19 Hb_003688_100 0.1098539462 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
20 Hb_000307_170 0.1099548879 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]

Gene co-expression network

sample Hb_006501_150 Hb_006501_150 Hb_143766_090 Hb_143766_090 Hb_006501_150--Hb_143766_090 Hb_001514_020 Hb_001514_020 Hb_006501_150--Hb_001514_020 Hb_005333_040 Hb_005333_040 Hb_006501_150--Hb_005333_040 Hb_004502_030 Hb_004502_030 Hb_006501_150--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006501_150--Hb_033080_010 Hb_000183_070 Hb_000183_070 Hb_006501_150--Hb_000183_070 Hb_143766_090--Hb_001514_020 Hb_003688_100 Hb_003688_100 Hb_143766_090--Hb_003688_100 Hb_000141_060 Hb_000141_060 Hb_143766_090--Hb_000141_060 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001405_050 Hb_001405_050 Hb_143766_090--Hb_001405_050 Hb_001514_020--Hb_003688_100 Hb_000847_070 Hb_000847_070 Hb_001514_020--Hb_000847_070 Hb_001514_020--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_005333_040--Hb_033080_010 Hb_000270_840 Hb_000270_840 Hb_005333_040--Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_005333_040--Hb_000538_020 Hb_000329_690 Hb_000329_690 Hb_005333_040--Hb_000329_690 Hb_004970_200 Hb_004970_200 Hb_005333_040--Hb_004970_200 Hb_004502_030--Hb_000847_070 Hb_004502_030--Hb_007992_030 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_033080_010--Hb_000329_690 Hb_033080_010--Hb_000345_560 Hb_006261_040 Hb_006261_040 Hb_033080_010--Hb_006261_040 Hb_033080_010--Hb_007992_030 Hb_005714_040 Hb_005714_040 Hb_000183_070--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_005015_010 Hb_005015_010 Hb_000183_070--Hb_005015_010 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.5044 12.4713 19.5288 2.99364 81.2078 55.2457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.3592 60.4618 22.2362 12.6 5.81967

CAGE analysis