Hb_006502_020

Information

Type -
Description -
Location Contig6502: 5220-17745
Sequence    

Annotation

kegg
ID cit:102609376
description mitogen-activated protein kinase kinase kinase 1-like
nr
ID XP_012065654.1
description PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID A0A067L8R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16910 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52548: 5291-5727 , PASA_asmbl_52549: 5942-7334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006502_020 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
2 Hb_001245_050 0.09771103 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
3 Hb_002265_010 0.1027182901 - - ef-hand calcium binding protein, putative [Ricinus communis]
4 Hb_001558_060 0.1077023786 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
5 Hb_000375_290 0.1138238566 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_004725_030 0.1152918932 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
7 Hb_003992_180 0.1174225599 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
8 Hb_000579_190 0.1174431428 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
9 Hb_002248_130 0.1181659392 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
10 Hb_023226_070 0.1198823564 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003777_110 0.1204977421 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
12 Hb_003605_050 0.1206164016 - - protein with unknown function [Ricinus communis]
13 Hb_013405_150 0.120653136 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
14 Hb_005694_130 0.1214360672 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
15 Hb_008387_010 0.1216276425 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
16 Hb_000115_340 0.121956805 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
17 Hb_001009_120 0.1219623669 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
18 Hb_000048_080 0.1229800649 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
19 Hb_003925_060 0.1237259641 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
20 Hb_008165_030 0.1250024114 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]

Gene co-expression network

sample Hb_006502_020 Hb_006502_020 Hb_001245_050 Hb_001245_050 Hb_006502_020--Hb_001245_050 Hb_002265_010 Hb_002265_010 Hb_006502_020--Hb_002265_010 Hb_001558_060 Hb_001558_060 Hb_006502_020--Hb_001558_060 Hb_000375_290 Hb_000375_290 Hb_006502_020--Hb_000375_290 Hb_004725_030 Hb_004725_030 Hb_006502_020--Hb_004725_030 Hb_003992_180 Hb_003992_180 Hb_006502_020--Hb_003992_180 Hb_003777_110 Hb_003777_110 Hb_001245_050--Hb_003777_110 Hb_006452_180 Hb_006452_180 Hb_001245_050--Hb_006452_180 Hb_000866_450 Hb_000866_450 Hb_001245_050--Hb_000866_450 Hb_000115_340 Hb_000115_340 Hb_001245_050--Hb_000115_340 Hb_001245_050--Hb_000375_290 Hb_000120_030 Hb_000120_030 Hb_001245_050--Hb_000120_030 Hb_155025_010 Hb_155025_010 Hb_002265_010--Hb_155025_010 Hb_005873_020 Hb_005873_020 Hb_002265_010--Hb_005873_020 Hb_005731_110 Hb_005731_110 Hb_002265_010--Hb_005731_110 Hb_000663_020 Hb_000663_020 Hb_002265_010--Hb_000663_020 Hb_065525_130 Hb_065525_130 Hb_002265_010--Hb_065525_130 Hb_023226_070 Hb_023226_070 Hb_001558_060--Hb_023226_070 Hb_001558_060--Hb_000375_290 Hb_008165_030 Hb_008165_030 Hb_001558_060--Hb_008165_030 Hb_001558_060--Hb_003992_180 Hb_000579_190 Hb_000579_190 Hb_001558_060--Hb_000579_190 Hb_002811_040 Hb_002811_040 Hb_001558_060--Hb_002811_040 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_000375_290--Hb_000579_190 Hb_000375_290--Hb_023226_070 Hb_000139_220 Hb_000139_220 Hb_004725_030--Hb_000139_220 Hb_005656_080 Hb_005656_080 Hb_004725_030--Hb_005656_080 Hb_000077_120 Hb_000077_120 Hb_004725_030--Hb_000077_120 Hb_001621_110 Hb_001621_110 Hb_004725_030--Hb_001621_110 Hb_013405_150 Hb_013405_150 Hb_004725_030--Hb_013405_150 Hb_026234_010 Hb_026234_010 Hb_004725_030--Hb_026234_010 Hb_030545_030 Hb_030545_030 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_012305_140 Hb_012305_140 Hb_003992_180--Hb_012305_140 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_005694_130 Hb_005694_130 Hb_003992_180--Hb_005694_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.80831 5.07038 6.11078 1.99516 1.93327 2.83224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10393 1.65035 1.18658 0.884495 2.38776

CAGE analysis