Hb_006502_030

Information

Type -
Description -
Location Contig6502: 19610-23402
Sequence    

Annotation

kegg
ID rcu:RCOM_0275810
description hec1 protein, putative
nr
ID XP_012065655.1
description PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
swissprot
ID Q10198
description Kinetochore protein ndc80 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ndc80 PE=1 SV=1
trembl
ID A0A067LHE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16911 PE=4 SV=1
Gene Ontology
ID GO:0006259
description probable kinetochore protein ndc80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52553: 19616-21428 , PASA_asmbl_52555: 21440-23241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006502_030 0.0 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
2 Hb_015026_130 0.0841653869 - - quinone oxidoreductase, putative [Ricinus communis]
3 Hb_006468_010 0.0847849088 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
4 Hb_003020_100 0.0879233191 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
5 Hb_122548_010 0.0891007094 - - acyl-CoA oxidase, putative [Ricinus communis]
6 Hb_001114_110 0.0931054838 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
7 Hb_006006_040 0.0934703919 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
8 Hb_002874_090 0.0981293521 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
9 Hb_000402_150 0.1004390783 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
10 Hb_021165_010 0.1012687816 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
11 Hb_089140_040 0.1031787082 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
12 Hb_001307_240 0.1036694751 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
13 Hb_001141_310 0.1059960699 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
14 Hb_000579_130 0.1067291981 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000017_230 0.1068438826 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
16 Hb_004544_040 0.1069303233 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
17 Hb_005489_140 0.1069325764 - - PREDICTED: maspardin [Jatropha curcas]
18 Hb_002995_040 0.1085261476 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
19 Hb_188063_050 0.1087038452 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
20 Hb_003363_080 0.1088402113 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_006502_030 Hb_006502_030 Hb_015026_130 Hb_015026_130 Hb_006502_030--Hb_015026_130 Hb_006468_010 Hb_006468_010 Hb_006502_030--Hb_006468_010 Hb_003020_100 Hb_003020_100 Hb_006502_030--Hb_003020_100 Hb_122548_010 Hb_122548_010 Hb_006502_030--Hb_122548_010 Hb_001114_110 Hb_001114_110 Hb_006502_030--Hb_001114_110 Hb_006006_040 Hb_006006_040 Hb_006502_030--Hb_006006_040 Hb_000089_180 Hb_000089_180 Hb_015026_130--Hb_000089_180 Hb_000085_450 Hb_000085_450 Hb_015026_130--Hb_000085_450 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110 Hb_000890_160 Hb_000890_160 Hb_006468_010--Hb_000890_160 Hb_003636_080 Hb_003636_080 Hb_006468_010--Hb_003636_080 Hb_000297_030 Hb_000297_030 Hb_006468_010--Hb_000297_030 Hb_016461_020 Hb_016461_020 Hb_006468_010--Hb_016461_020 Hb_115137_010 Hb_115137_010 Hb_006468_010--Hb_115137_010 Hb_089140_040 Hb_089140_040 Hb_006468_010--Hb_089140_040 Hb_000322_080 Hb_000322_080 Hb_003020_100--Hb_000322_080 Hb_003020_100--Hb_006006_040 Hb_001500_100 Hb_001500_100 Hb_003020_100--Hb_001500_100 Hb_003020_100--Hb_000085_450 Hb_000836_460 Hb_000836_460 Hb_003020_100--Hb_000836_460 Hb_021165_010 Hb_021165_010 Hb_003020_100--Hb_021165_010 Hb_002983_080 Hb_002983_080 Hb_122548_010--Hb_002983_080 Hb_122548_010--Hb_015026_130 Hb_001405_210 Hb_001405_210 Hb_122548_010--Hb_001405_210 Hb_000120_550 Hb_000120_550 Hb_122548_010--Hb_000120_550 Hb_004055_050 Hb_004055_050 Hb_122548_010--Hb_004055_050 Hb_001114_110--Hb_021165_010 Hb_000962_030 Hb_000962_030 Hb_001114_110--Hb_000962_030 Hb_031527_030 Hb_031527_030 Hb_001114_110--Hb_031527_030 Hb_016172_030 Hb_016172_030 Hb_001114_110--Hb_016172_030 Hb_001434_080 Hb_001434_080 Hb_001114_110--Hb_001434_080 Hb_005215_020 Hb_005215_020 Hb_006006_040--Hb_005215_020 Hb_006006_040--Hb_000085_450 Hb_001329_200 Hb_001329_200 Hb_006006_040--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_006006_040--Hb_001328_080 Hb_007409_040 Hb_007409_040 Hb_006006_040--Hb_007409_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9611 5.56974 5.82564 7.62187 2.02986 4.55331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82688 2.50035 2.098 7.24213 2.47614

CAGE analysis